Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS15560

Experiment: reconstituted MRS with ISOThrive-prebiotic lot C 0.5 %w/v

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	reconstituted MRS with ISOThrive-prebiotic lot C 0.5 %w/v
1,262,902	-				-1.6
1,262,963	-				+1.7
1,263,007	-		BBR_RS15555	0.13	-0.1
1,263,135	-		BBR_RS15555	0.29	+0.7
1,263,140	-		BBR_RS15555	0.29	+0.9
1,263,187	+		BBR_RS15555	0.35	+0.3
1,263,195	-		BBR_RS15555	0.36	-0.4
1,263,241	+		BBR_RS15555	0.41	-0.6
1,263,515	+		BBR_RS15555	0.73	+1.3
1,263,653	-		BBR_RS15555	0.89	-0.2
1,263,663	-				+1.2
1,263,683	+				+0.6
1,263,891	+				+0.2
1,263,913	+				+0.3
1,263,941	+				-0.6
1,264,141	+		BBR_RS15560	0.16	-1.4
1,264,208	-		BBR_RS15560	0.21	-0.5
1,264,259	+		BBR_RS15560	0.24	+0.3
1,264,259	+		BBR_RS15560	0.24	-0.2
1,264,264	+		BBR_RS15560	0.24	-0.4
1,264,489	+		BBR_RS15560	0.39	-0.5
1,264,500	+		BBR_RS15560	0.40	-0.1
1,264,509	+		BBR_RS15560	0.41	-0.4
1,264,560	+		BBR_RS15560	0.44	-0.4
1,264,604	+		BBR_RS15560	0.47	-0.4
1,264,869	+		BBR_RS15560	0.65	-0.6
1,264,883	+		BBR_RS15560	0.66	+1.5
1,264,891	-		BBR_RS15560	0.66	+0.6
1,264,891	-		BBR_RS15560	0.66	+1.6
1,264,965	+		BBR_RS15560	0.71	+0.3
1,265,009	+		BBR_RS15560	0.74	-0.3
1,265,009	+		BBR_RS15560	0.74	+0.1
1,265,055	+		BBR_RS15560	0.77	-0.7
1,265,072	+		BBR_RS15560	0.78	-0.8
1,265,078	-		BBR_RS15560	0.79	+0.5
1,265,123	-		BBR_RS15560	0.82	+0.8
1,265,340	+				+1.0
1,265,340	+				-0.5
1,265,431	+				-0.5
1,265,473	+				-0.6
1,265,473	+				-0.3
1,265,531	-				-0.7
1,265,534	+				-0.4
1,265,546	+				+0.3
1,265,659	-				+0.3
1,265,807	-				+0.3
1,265,812	+				-0.4
1,265,815	-				+0.6
1,265,821	+				-1.7
1,265,896	+				-1.7
1,265,896	+				-0.2
1,265,927	-				-0.4
1,265,927	-				-0.5
1,265,939	+				+0.1
1,265,944	+				+0.2
1,265,944	+				+0.1
1,265,955	-				+0.2
1,265,955	-				-0.5
1,265,955	-				+0.2
1,265,955	-				-0.8
1,265,971	+				+1.3
1,266,024	+		BBR_RS15565	0.11	+0.7
1,266,043	-		BBR_RS15565	0.12	+0.0
1,266,043	-		BBR_RS15565	0.12	+0.4
1,266,110	+		BBR_RS15565	0.18	+0.2
1,266,110	+		BBR_RS15565	0.18	+0.2
1,266,145	-		BBR_RS15565	0.21	+0.7
1,266,145	-		BBR_RS15565	0.21	-0.0
1,266,178	+		BBR_RS15565	0.24	-1.0
1,266,178	+		BBR_RS15565	0.24	-0.5
1,266,231	-		BBR_RS15565	0.28	+0.1
1,266,291	-		BBR_RS15565	0.33	+0.4
1,266,338	-		BBR_RS15565	0.37	-0.4
1,266,376	+		BBR_RS15565	0.40	+0.3