Experiment: m.b. Dimethyl Sulfoxide 5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2113 and Dshi_2114 are separated by 82 nucleotides Dshi_2114 and Dshi_2115 are separated by 13 nucleotides
Dshi_2113: Dshi_2113 - Glycine hydroxymethyltransferase (RefSeq), at 2,241,420 to 2,242,694
_2113
Dshi_2114: Dshi_2114 - Sarcosine oxidase gamma subunit (RefSeq), at 2,242,777 to 2,243,307
_2114
Dshi_2115: Dshi_2115 - sarcosine oxidase, alpha subunit family (RefSeq), at 2,243,321 to 2,246,323
_2115
Position (kb)
2242
2243
2244 Strain fitness (log2 ratio)
-1
0
1
2 at 2241.917 kb on + strand, within Dshi_2113 at 2241.946 kb on + strand, within Dshi_2113 at 2242.033 kb on + strand, within Dshi_2113 at 2242.073 kb on + strand, within Dshi_2113 at 2242.187 kb on + strand, within Dshi_2113 at 2242.192 kb on + strand, within Dshi_2113 at 2242.200 kb on - strand, within Dshi_2113 at 2242.254 kb on - strand, within Dshi_2113 at 2242.264 kb on - strand, within Dshi_2113 at 2242.264 kb on - strand, within Dshi_2113 at 2242.300 kb on + strand, within Dshi_2113 at 2242.342 kb on + strand, within Dshi_2113 at 2242.342 kb on - strand, within Dshi_2113 at 2242.475 kb on - strand, within Dshi_2113 at 2242.475 kb on - strand, within Dshi_2113 at 2242.495 kb on - strand, within Dshi_2113 at 2242.725 kb on - strand at 2242.776 kb on + strand at 2242.820 kb on - strand at 2243.028 kb on + strand, within Dshi_2114 at 2243.028 kb on + strand, within Dshi_2114 at 2243.083 kb on + strand, within Dshi_2114 at 2243.137 kb on - strand, within Dshi_2114 at 2243.139 kb on - strand, within Dshi_2114 at 2243.139 kb on - strand, within Dshi_2114 at 2243.185 kb on + strand, within Dshi_2114 at 2243.193 kb on - strand, within Dshi_2114 at 2243.214 kb on - strand, within Dshi_2114 at 2243.309 kb on + strand at 2243.330 kb on - strand at 2243.431 kb on + strand at 2243.487 kb on - strand at 2243.737 kb on - strand at 2243.747 kb on - strand, within Dshi_2115 at 2243.799 kb on + strand, within Dshi_2115 at 2243.820 kb on + strand, within Dshi_2115 at 2243.848 kb on - strand, within Dshi_2115 at 2243.931 kb on + strand, within Dshi_2115 at 2243.951 kb on - strand, within Dshi_2115 at 2244.255 kb on + strand, within Dshi_2115 at 2244.262 kb on + strand, within Dshi_2115 at 2244.263 kb on - strand, within Dshi_2115
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 5 vol% remove 2,241,917 + Dshi_2113 0.39 -0.8 2,241,946 + Dshi_2113 0.41 +0.6 2,242,033 + Dshi_2113 0.48 -0.2 2,242,073 + Dshi_2113 0.51 -0.7 2,242,187 + Dshi_2113 0.60 +0.9 2,242,192 + Dshi_2113 0.61 -0.0 2,242,200 - Dshi_2113 0.61 +0.4 2,242,254 - Dshi_2113 0.65 -0.1 2,242,264 - Dshi_2113 0.66 -1.2 2,242,264 - Dshi_2113 0.66 +0.8 2,242,300 + Dshi_2113 0.69 +0.1 2,242,342 + Dshi_2113 0.72 -0.7 2,242,342 - Dshi_2113 0.72 +0.3 2,242,475 - Dshi_2113 0.83 +0.1 2,242,475 - Dshi_2113 0.83 -0.9 2,242,495 - Dshi_2113 0.84 +2.4 2,242,725 - -1.7 2,242,776 + +0.6 2,242,820 - +2.5 2,243,028 + Dshi_2114 0.47 -0.5 2,243,028 + Dshi_2114 0.47 +0.2 2,243,083 + Dshi_2114 0.58 -0.7 2,243,137 - Dshi_2114 0.68 -1.3 2,243,139 - Dshi_2114 0.68 -1.0 2,243,139 - Dshi_2114 0.68 -0.3 2,243,185 + Dshi_2114 0.77 -0.2 2,243,193 - Dshi_2114 0.78 -0.5 2,243,214 - Dshi_2114 0.82 -0.8 2,243,309 + -0.2 2,243,330 - -0.6 2,243,431 + -0.6 2,243,487 - -0.3 2,243,737 - +0.4 2,243,747 - Dshi_2115 0.14 -0.6 2,243,799 + Dshi_2115 0.16 -0.9 2,243,820 + Dshi_2115 0.17 -0.3 2,243,848 - Dshi_2115 0.18 -0.4 2,243,931 + Dshi_2115 0.20 +0.0 2,243,951 - Dshi_2115 0.21 -0.9 2,244,255 + Dshi_2115 0.31 +0.5 2,244,262 + Dshi_2115 0.31 -0.3 2,244,263 - Dshi_2115 0.31 +0.4
Or see this region's nucleotide sequence