Experiment: m.b. Dimethyl Sulfoxide 5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1210 and Dshi_1211 are separated by 12 nucleotides Dshi_1211 and Dshi_1212 overlap by 4 nucleotides Dshi_1212 and Dshi_1213 are separated by 41 nucleotides Dshi_1213 and Dshi_1214 overlap by 4 nucleotides
Dshi_1210: Dshi_1210 - molybdopterin dehydrogenase FAD-binding (RefSeq), at 1,249,012 to 1,249,866
_1210
Dshi_1211: Dshi_1211 - (2Fe-2S)-binding domain protein (RefSeq), at 1,249,879 to 1,250,370
_1211
Dshi_1212: Dshi_1212 - carbon-monoxide dehydrogenase, large subunit (RefSeq), at 1,250,367 to 1,252,787
_1212
Dshi_1213: Dshi_1213 - ATPase associated with various cellular activities AAA_5 (RefSeq), at 1,252,829 to 1,253,737
_1213
Dshi_1214: Dshi_1214 - VWA containing CoxE family protein (RefSeq), at 1,253,734 to 1,254,912
_1214
Position (kb)
1250
1251
1252
1253 Strain fitness (log2 ratio)
-2
-1
0
1 at 1249.433 kb on - strand, within Dshi_1210 at 1249.543 kb on + strand, within Dshi_1210 at 1249.660 kb on - strand, within Dshi_1210 at 1249.660 kb on - strand, within Dshi_1210 at 1249.707 kb on - strand, within Dshi_1210 at 1249.833 kb on - strand at 1249.866 kb on + strand at 1249.893 kb on + strand at 1249.963 kb on - strand, within Dshi_1211 at 1250.001 kb on - strand, within Dshi_1211 at 1250.066 kb on - strand, within Dshi_1211 at 1250.082 kb on + strand, within Dshi_1211 at 1250.090 kb on - strand, within Dshi_1211 at 1250.280 kb on + strand, within Dshi_1211 at 1250.418 kb on + strand at 1250.418 kb on + strand at 1250.426 kb on - strand at 1250.532 kb on + strand at 1250.536 kb on + strand at 1250.626 kb on - strand, within Dshi_1212 at 1250.712 kb on - strand, within Dshi_1212 at 1250.755 kb on + strand, within Dshi_1212 at 1250.773 kb on - strand, within Dshi_1212 at 1251.041 kb on + strand, within Dshi_1212 at 1251.043 kb on - strand, within Dshi_1212 at 1251.268 kb on + strand, within Dshi_1212 at 1251.400 kb on + strand, within Dshi_1212 at 1251.518 kb on - strand, within Dshi_1212 at 1251.564 kb on + strand, within Dshi_1212 at 1251.642 kb on + strand, within Dshi_1212 at 1251.642 kb on + strand, within Dshi_1212 at 1251.699 kb on - strand, within Dshi_1212 at 1251.706 kb on - strand, within Dshi_1212 at 1251.732 kb on - strand, within Dshi_1212 at 1251.829 kb on + strand, within Dshi_1212 at 1251.945 kb on - strand, within Dshi_1212 at 1251.950 kb on - strand, within Dshi_1212 at 1252.004 kb on - strand, within Dshi_1212 at 1252.015 kb on - strand, within Dshi_1212 at 1252.069 kb on + strand, within Dshi_1212 at 1252.228 kb on - strand, within Dshi_1212 at 1252.251 kb on + strand, within Dshi_1212 at 1252.259 kb on - strand, within Dshi_1212 at 1252.705 kb on + strand at 1252.808 kb on + strand at 1252.815 kb on - strand at 1252.816 kb on - strand at 1252.863 kb on - strand at 1252.924 kb on + strand, within Dshi_1213 at 1253.021 kb on + strand, within Dshi_1213 at 1253.063 kb on - strand, within Dshi_1213 at 1253.322 kb on + strand, within Dshi_1213 at 1253.340 kb on - strand, within Dshi_1213 at 1253.621 kb on - strand, within Dshi_1213 at 1253.706 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 5 vol% remove 1,249,433 - Dshi_1210 0.49 -0.3 1,249,543 + Dshi_1210 0.62 -0.8 1,249,660 - Dshi_1210 0.76 -2.2 1,249,660 - Dshi_1210 0.76 -0.6 1,249,707 - Dshi_1210 0.81 -0.2 1,249,833 - -0.6 1,249,866 + -0.9 1,249,893 + -0.4 1,249,963 - Dshi_1211 0.17 -0.3 1,250,001 - Dshi_1211 0.25 +0.6 1,250,066 - Dshi_1211 0.38 -1.7 1,250,082 + Dshi_1211 0.41 -0.7 1,250,090 - Dshi_1211 0.43 -0.5 1,250,280 + Dshi_1211 0.82 +0.2 1,250,418 + +0.3 1,250,418 + -0.1 1,250,426 - +0.0 1,250,532 + +1.0 1,250,536 + -0.8 1,250,626 - Dshi_1212 0.11 -0.6 1,250,712 - Dshi_1212 0.14 +0.1 1,250,755 + Dshi_1212 0.16 +0.1 1,250,773 - Dshi_1212 0.17 -1.5 1,251,041 + Dshi_1212 0.28 +0.4 1,251,043 - Dshi_1212 0.28 -0.3 1,251,268 + Dshi_1212 0.37 +0.9 1,251,400 + Dshi_1212 0.43 -0.0 1,251,518 - Dshi_1212 0.48 +0.5 1,251,564 + Dshi_1212 0.49 -0.1 1,251,642 + Dshi_1212 0.53 -0.5 1,251,642 + Dshi_1212 0.53 -0.9 1,251,699 - Dshi_1212 0.55 -0.1 1,251,706 - Dshi_1212 0.55 +0.5 1,251,732 - Dshi_1212 0.56 +0.8 1,251,829 + Dshi_1212 0.60 -0.4 1,251,945 - Dshi_1212 0.65 +0.1 1,251,950 - Dshi_1212 0.65 +0.5 1,252,004 - Dshi_1212 0.68 +0.3 1,252,015 - Dshi_1212 0.68 -0.2 1,252,069 + Dshi_1212 0.70 -0.2 1,252,228 - Dshi_1212 0.77 +0.8 1,252,251 + Dshi_1212 0.78 +0.7 1,252,259 - Dshi_1212 0.78 +0.1 1,252,705 + +0.5 1,252,808 + -0.4 1,252,815 - +0.5 1,252,816 - -1.7 1,252,863 - +0.3 1,252,924 + Dshi_1213 0.10 +0.5 1,253,021 + Dshi_1213 0.21 -0.2 1,253,063 - Dshi_1213 0.26 -0.5 1,253,322 + Dshi_1213 0.54 -0.0 1,253,340 - Dshi_1213 0.56 -0.1 1,253,621 - Dshi_1213 0.87 +0.7 1,253,706 - +0.1
Or see this region's nucleotide sequence