Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01444

Experiment: PYE 25C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01442 and CCNA_01443 are separated by 7 nucleotidesCCNA_01443 and CCNA_01444 are separated by 87 nucleotidesCCNA_01444 and CCNA_01445 are separated by 89 nucleotidesCCNA_01445 and CCNA_01446 are separated by 108 nucleotides CCNA_01442: CCNA_01442 - N-acetyl-gamma-glutamyl-phosphate reductase, at 1,553,908 to 1,554,861 _01442 CCNA_01443: CCNA_01443 - hypothetical protein, at 1,554,869 to 1,555,501 _01443 CCNA_01444: CCNA_01444 - poly(3-hydroxyalkanoate) polymerase, at 1,555,589 to 1,557,607 _01444 CCNA_01445: CCNA_01445 - hypothetical protein, at 1,557,697 to 1,558,137 _01445 CCNA_01446: CCNA_01446 - LL-diaminopimelate aminotransferase, at 1,558,246 to 1,559,466 _01446 Position (kb) 1555 1556 1557 1558Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1554.624 kb on + strandat 1554.853 kb on + strandat 1554.853 kb on + strandat 1554.853 kb on + strandat 1554.856 kb on + strandat 1554.864 kb on - strandat 1554.864 kb on - strandat 1554.892 kb on - strandat 1554.907 kb on + strandat 1554.925 kb on + strandat 1554.933 kb on - strand, within CCNA_01443at 1554.992 kb on + strand, within CCNA_01443at 1555.000 kb on - strand, within CCNA_01443at 1555.098 kb on - strand, within CCNA_01443at 1555.170 kb on - strand, within CCNA_01443at 1555.172 kb on - strand, within CCNA_01443at 1555.220 kb on - strand, within CCNA_01443at 1555.282 kb on + strand, within CCNA_01443at 1555.292 kb on - strand, within CCNA_01443at 1555.304 kb on + strand, within CCNA_01443at 1555.435 kb on - strand, within CCNA_01443at 1555.469 kb on + strandat 1555.469 kb on + strandat 1555.469 kb on + strandat 1555.469 kb on + strandat 1555.469 kb on + strandat 1555.469 kb on + strandat 1555.469 kb on + strandat 1555.471 kb on - strandat 1555.476 kb on - strandat 1555.477 kb on - strandat 1555.477 kb on - strandat 1555.477 kb on - strandat 1555.477 kb on - strandat 1555.477 kb on - strandat 1555.477 kb on - strandat 1555.477 kb on - strandat 1555.477 kb on - strandat 1555.477 kb on - strandat 1555.477 kb on - strandat 1555.477 kb on - strandat 1555.524 kb on - strandat 1555.607 kb on - strandat 1555.639 kb on + strandat 1555.650 kb on + strandat 1555.693 kb on + strandat 1555.701 kb on - strandat 1555.701 kb on - strandat 1555.796 kb on - strand, within CCNA_01444at 1555.856 kb on + strand, within CCNA_01444at 1555.977 kb on - strand, within CCNA_01444at 1555.998 kb on - strand, within CCNA_01444at 1556.013 kb on + strand, within CCNA_01444at 1556.090 kb on - strand, within CCNA_01444at 1556.180 kb on - strand, within CCNA_01444at 1556.188 kb on - strand, within CCNA_01444at 1556.229 kb on - strand, within CCNA_01444at 1556.246 kb on + strand, within CCNA_01444at 1556.269 kb on + strand, within CCNA_01444at 1556.367 kb on + strand, within CCNA_01444at 1556.375 kb on - strand, within CCNA_01444at 1556.395 kb on + strand, within CCNA_01444at 1556.491 kb on - strand, within CCNA_01444at 1556.508 kb on + strand, within CCNA_01444at 1556.511 kb on - strand, within CCNA_01444at 1556.515 kb on + strand, within CCNA_01444at 1556.516 kb on - strand, within CCNA_01444at 1556.540 kb on + strand, within CCNA_01444at 1556.540 kb on + strand, within CCNA_01444at 1556.548 kb on - strand, within CCNA_01444at 1556.548 kb on - strand, within CCNA_01444at 1556.548 kb on - strand, within CCNA_01444at 1556.548 kb on - strand, within CCNA_01444at 1556.713 kb on + strand, within CCNA_01444at 1556.741 kb on - strand, within CCNA_01444at 1556.741 kb on - strand, within CCNA_01444at 1556.744 kb on + strand, within CCNA_01444at 1556.744 kb on + strand, within CCNA_01444at 1556.855 kb on - strand, within CCNA_01444at 1556.855 kb on - strand, within CCNA_01444at 1556.916 kb on - strand, within CCNA_01444at 1557.000 kb on + strand, within CCNA_01444at 1557.008 kb on - strand, within CCNA_01444at 1557.008 kb on - strand, within CCNA_01444at 1557.008 kb on - strand, within CCNA_01444at 1557.256 kb on - strand, within CCNA_01444at 1557.349 kb on - strand, within CCNA_01444at 1557.351 kb on + strand, within CCNA_01444at 1557.359 kb on - strand, within CCNA_01444at 1557.366 kb on + strand, within CCNA_01444at 1557.374 kb on - strand, within CCNA_01444at 1557.462 kb on + strandat 1557.470 kb on - strandat 1557.470 kb on - strandat 1557.471 kb on - strandat 1557.472 kb on + strandat 1557.490 kb on - strandat 1557.510 kb on + strandat 1557.510 kb on + strandat 1557.518 kb on - strandat 1557.518 kb on - strandat 1557.518 kb on - strandat 1557.567 kb on + strandat 1557.598 kb on - strandat 1557.608 kb on + strandat 1557.610 kb on - strandat 1557.611 kb on - strandat 1557.624 kb on + strandat 1557.656 kb on + strandat 1557.684 kb on - strandat 1557.738 kb on - strandat 1557.738 kb on - strandat 1557.796 kb on - strand, within CCNA_01445at 1557.829 kb on + strand, within CCNA_01445at 1557.840 kb on + strand, within CCNA_01445at 1557.840 kb on + strand, within CCNA_01445at 1557.840 kb on + strand, within CCNA_01445at 1557.840 kb on + strand, within CCNA_01445at 1557.840 kb on + strand, within CCNA_01445at 1557.840 kb on + strand, within CCNA_01445at 1557.840 kb on + strand, within CCNA_01445at 1557.840 kb on + strand, within CCNA_01445at 1557.848 kb on - strand, within CCNA_01445at 1557.848 kb on - strand, within CCNA_01445at 1557.848 kb on - strand, within CCNA_01445at 1557.848 kb on - strand, within CCNA_01445at 1557.887 kb on + strand, within CCNA_01445at 1557.915 kb on + strand, within CCNA_01445at 1557.923 kb on - strand, within CCNA_01445at 1557.982 kb on + strand, within CCNA_01445at 1557.984 kb on + strand, within CCNA_01445at 1558.050 kb on - strand, within CCNA_01445at 1558.075 kb on + strand, within CCNA_01445at 1558.081 kb on + strand, within CCNA_01445at 1558.096 kb on + strandat 1558.096 kb on + strandat 1558.114 kb on - strandat 1558.123 kb on + strandat 1558.173 kb on + strandat 1558.248 kb on - strandat 1558.290 kb on - strandat 1558.367 kb on - strandat 1558.381 kb on + strand, within CCNA_01446at 1558.389 kb on - strand, within CCNA_01446at 1558.423 kb on + strand, within CCNA_01446at 1558.434 kb on + strand, within CCNA_01446at 1558.457 kb on + strand, within CCNA_01446at 1558.465 kb on - strand, within CCNA_01446at 1558.473 kb on + strand, within CCNA_01446at 1558.473 kb on + strandat 1558.474 kb on + strand, within CCNA_01446at 1558.482 kb on - strand, within CCNA_01446at 1558.482 kb on - strand, within CCNA_01446at 1558.573 kb on + strand, within CCNA_01446at 1558.576 kb on - strand, within CCNA_01446at 1558.584 kb on + strand, within CCNA_01446at 1558.587 kb on - strand, within CCNA_01446at 1558.588 kb on + strand, within CCNA_01446

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE 25C
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1,554,624 + +1.9
1,554,853 + +0.0
1,554,853 + +0.5
1,554,853 + -0.2
1,554,856 + -0.1
1,554,864 - +0.4
1,554,864 - -1.0
1,554,892 - +0.0
1,554,907 + +1.9
1,554,925 + -0.0
1,554,933 - CCNA_01443 0.10 +0.2
1,554,992 + CCNA_01443 0.19 -0.1
1,555,000 - CCNA_01443 0.21 -0.3
1,555,098 - CCNA_01443 0.36 -0.1
1,555,170 - CCNA_01443 0.48 -0.1
1,555,172 - CCNA_01443 0.48 -1.1
1,555,220 - CCNA_01443 0.55 -0.8
1,555,282 + CCNA_01443 0.65 -0.7
1,555,292 - CCNA_01443 0.67 -0.6
1,555,304 + CCNA_01443 0.69 -1.8
1,555,435 - CCNA_01443 0.89 +0.4
1,555,469 + -0.9
1,555,469 + +0.0
1,555,469 + -0.7
1,555,469 + -1.1
1,555,469 + -1.1
1,555,469 + -0.5
1,555,469 + +0.1
1,555,471 - -0.8
1,555,476 - +0.1
1,555,477 - -0.3
1,555,477 - -0.3
1,555,477 - -0.0
1,555,477 - -0.1
1,555,477 - -0.4
1,555,477 - -0.0
1,555,477 - +0.1
1,555,477 - -1.5
1,555,477 - -0.6
1,555,477 - +0.2
1,555,477 - -0.9
1,555,524 - +0.9
1,555,607 - -0.2
1,555,639 + -2.1
1,555,650 + -0.5
1,555,693 + -0.1
1,555,701 - -2.1
1,555,701 - +0.5
1,555,796 - CCNA_01444 0.10 -1.2
1,555,856 + CCNA_01444 0.13 -0.6
1,555,977 - CCNA_01444 0.19 -3.0
1,555,998 - CCNA_01444 0.20 -1.0
1,556,013 + CCNA_01444 0.21 -0.9
1,556,090 - CCNA_01444 0.25 -1.6
1,556,180 - CCNA_01444 0.29 +0.4
1,556,188 - CCNA_01444 0.30 -2.8
1,556,229 - CCNA_01444 0.32 -1.1
1,556,246 + CCNA_01444 0.33 -0.4
1,556,269 + CCNA_01444 0.34 +0.4
1,556,367 + CCNA_01444 0.39 -1.4
1,556,375 - CCNA_01444 0.39 -2.7
1,556,395 + CCNA_01444 0.40 -1.0
1,556,491 - CCNA_01444 0.45 -1.2
1,556,508 + CCNA_01444 0.46 -1.2
1,556,511 - CCNA_01444 0.46 -1.8
1,556,515 + CCNA_01444 0.46 -1.9
1,556,516 - CCNA_01444 0.46 -2.3
1,556,540 + CCNA_01444 0.47 -1.2
1,556,540 + CCNA_01444 0.47 -1.6
1,556,548 - CCNA_01444 0.47 -0.6
1,556,548 - CCNA_01444 0.47 -2.0
1,556,548 - CCNA_01444 0.47 -2.3
1,556,548 - CCNA_01444 0.47 +0.4
1,556,713 + CCNA_01444 0.56 +0.4
1,556,741 - CCNA_01444 0.57 -1.4
1,556,741 - CCNA_01444 0.57 -1.1
1,556,744 + CCNA_01444 0.57 +0.1
1,556,744 + CCNA_01444 0.57 -0.6
1,556,855 - CCNA_01444 0.63 -0.8
1,556,855 - CCNA_01444 0.63 -2.5
1,556,916 - CCNA_01444 0.66 -2.3
1,557,000 + CCNA_01444 0.70 -1.4
1,557,008 - CCNA_01444 0.70 -2.6
1,557,008 - CCNA_01444 0.70 -1.8
1,557,008 - CCNA_01444 0.70 -0.9
1,557,256 - CCNA_01444 0.83 -1.5
1,557,349 - CCNA_01444 0.87 -0.6
1,557,351 + CCNA_01444 0.87 -0.6
1,557,359 - CCNA_01444 0.88 -0.5
1,557,366 + CCNA_01444 0.88 -0.5
1,557,374 - CCNA_01444 0.88 -1.0
1,557,462 + -0.2
1,557,470 - +0.0
1,557,470 - +0.2
1,557,471 - -1.7
1,557,472 + -1.1
1,557,490 - +0.3
1,557,510 + -1.0
1,557,510 + +0.9
1,557,518 - +0.2
1,557,518 - -1.6
1,557,518 - +0.4
1,557,567 + +0.4
1,557,598 - -1.9
1,557,608 + +0.9
1,557,610 - -0.9
1,557,611 - +0.1
1,557,624 + -1.8
1,557,656 + +0.6
1,557,684 - -0.2
1,557,738 - -1.2
1,557,738 - +0.9
1,557,796 - CCNA_01445 0.22 +1.9
1,557,829 + CCNA_01445 0.30 -0.3
1,557,840 + CCNA_01445 0.32 +0.9
1,557,840 + CCNA_01445 0.32 +1.9
1,557,840 + CCNA_01445 0.32 -0.6
1,557,840 + CCNA_01445 0.32 -0.0
1,557,840 + CCNA_01445 0.32 +0.3
1,557,840 + CCNA_01445 0.32 +0.4
1,557,840 + CCNA_01445 0.32 +0.5
1,557,840 + CCNA_01445 0.32 -0.7
1,557,848 - CCNA_01445 0.34 +1.4
1,557,848 - CCNA_01445 0.34 +1.9
1,557,848 - CCNA_01445 0.34 +0.9
1,557,848 - CCNA_01445 0.34 +1.9
1,557,887 + CCNA_01445 0.43 -0.6
1,557,915 + CCNA_01445 0.49 -0.1
1,557,923 - CCNA_01445 0.51 +0.2
1,557,982 + CCNA_01445 0.65 +0.4
1,557,984 + CCNA_01445 0.65 -0.4
1,558,050 - CCNA_01445 0.80 -1.5
1,558,075 + CCNA_01445 0.86 +0.3
1,558,081 + CCNA_01445 0.87 +0.4
1,558,096 + -0.5
1,558,096 + -0.0
1,558,114 - +0.2
1,558,123 + -0.4
1,558,173 + -0.3
1,558,248 - +0.8
1,558,290 - -0.1
1,558,367 - +0.0
1,558,381 + CCNA_01446 0.11 +0.2
1,558,389 - CCNA_01446 0.12 +1.1
1,558,423 + CCNA_01446 0.14 -0.8
1,558,434 + CCNA_01446 0.15 -0.8
1,558,457 + CCNA_01446 0.17 +0.1
1,558,465 - CCNA_01446 0.18 -1.6
1,558,473 + CCNA_01446 0.19 -0.1
1,558,473 + +0.9
1,558,474 + CCNA_01446 0.19 +0.6
1,558,482 - CCNA_01446 0.19 -0.1
1,558,482 - CCNA_01446 0.19 -0.1
1,558,573 + CCNA_01446 0.27 -1.8
1,558,576 - CCNA_01446 0.27 -0.6
1,558,584 + CCNA_01446 0.28 -0.1
1,558,587 - CCNA_01446 0.28 -1.2
1,558,588 + CCNA_01446 0.28 +1.1

Or see this region's nucleotide sequence