Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS17825

Experiment: L-Arginine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS17815 and BWI76_RS17820 are separated by 132 nucleotidesBWI76_RS17820 and BWI76_RS17825 are separated by 164 nucleotidesBWI76_RS17825 and BWI76_RS17830 are separated by 7 nucleotides BWI76_RS17815: BWI76_RS17815 - ATP-dependent helicase, at 3,702,414 to 3,704,324 _RS17815 BWI76_RS17820: BWI76_RS17820 - hypothetical protein, at 3,704,457 to 3,704,801 _RS17820 BWI76_RS17825: BWI76_RS17825 - alginate lyase, at 3,704,966 to 3,706,105 _RS17825 BWI76_RS17830: BWI76_RS17830 - ABC transporter ATP-binding protein, at 3,706,113 to 3,707,207 _RS17830 Position (kb) 3704 3705 3706 3707Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3703.980 kb on - strand, within BWI76_RS17815at 3703.993 kb on - strand, within BWI76_RS17815at 3703.993 kb on - strand, within BWI76_RS17815at 3704.266 kb on + strandat 3704.530 kb on - strand, within BWI76_RS17820at 3704.724 kb on + strand, within BWI76_RS17820at 3704.796 kb on + strandat 3704.796 kb on + strandat 3704.804 kb on - strandat 3704.804 kb on - strandat 3704.828 kb on - strandat 3705.108 kb on + strand, within BWI76_RS17825at 3705.136 kb on - strand, within BWI76_RS17825at 3705.520 kb on + strand, within BWI76_RS17825at 3705.763 kb on - strand, within BWI76_RS17825at 3705.780 kb on - strand, within BWI76_RS17825at 3705.861 kb on + strand, within BWI76_RS17825at 3705.939 kb on - strand, within BWI76_RS17825at 3706.011 kb on + strandat 3706.035 kb on + strandat 3706.272 kb on - strand, within BWI76_RS17830at 3706.345 kb on + strand, within BWI76_RS17830at 3706.353 kb on - strand, within BWI76_RS17830at 3706.355 kb on + strand, within BWI76_RS17830at 3706.377 kb on - strand, within BWI76_RS17830at 3706.647 kb on - strand, within BWI76_RS17830at 3706.665 kb on + strand, within BWI76_RS17830at 3706.885 kb on + strand, within BWI76_RS17830at 3706.913 kb on - strand, within BWI76_RS17830at 3706.996 kb on - strand, within BWI76_RS17830

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
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3,703,980 - BWI76_RS17815 0.82 -0.6
3,703,993 - BWI76_RS17815 0.83 +0.3
3,703,993 - BWI76_RS17815 0.83 -0.9
3,704,266 + -0.7
3,704,530 - BWI76_RS17820 0.21 +0.7
3,704,724 + BWI76_RS17820 0.77 -0.2
3,704,796 + +0.6
3,704,796 + -0.4
3,704,804 - +0.5
3,704,804 - +0.5
3,704,828 - -0.9
3,705,108 + BWI76_RS17825 0.12 -0.0
3,705,136 - BWI76_RS17825 0.15 +0.3
3,705,520 + BWI76_RS17825 0.49 +0.4
3,705,763 - BWI76_RS17825 0.70 -1.2
3,705,780 - BWI76_RS17825 0.71 +0.1
3,705,861 + BWI76_RS17825 0.79 +0.5
3,705,939 - BWI76_RS17825 0.85 -0.0
3,706,011 + -0.4
3,706,035 + -3.3
3,706,272 - BWI76_RS17830 0.15 +0.8
3,706,345 + BWI76_RS17830 0.21 +2.2
3,706,353 - BWI76_RS17830 0.22 -0.8
3,706,355 + BWI76_RS17830 0.22 -0.0
3,706,377 - BWI76_RS17830 0.24 -0.7
3,706,647 - BWI76_RS17830 0.49 -1.6
3,706,665 + BWI76_RS17830 0.50 -1.1
3,706,885 + BWI76_RS17830 0.71 -0.5
3,706,913 - BWI76_RS17830 0.73 -0.3
3,706,996 - BWI76_RS17830 0.81 +0.7

Or see this region's nucleotide sequence