Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS09355

Experiment: L-Arginine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS09350 and BWI76_RS09355 are separated by 25 nucleotidesBWI76_RS09355 and BWI76_RS09360 are separated by 10 nucleotides BWI76_RS09350: BWI76_RS09350 - hypothetical protein, at 1,961,356 to 1,963,533 _RS09350 BWI76_RS09355: BWI76_RS09355 - hypothetical protein, at 1,963,559 to 1,964,257 _RS09355 BWI76_RS09360: BWI76_RS09360 - hypothetical protein, at 1,964,268 to 1,965,338 _RS09360 Position (kb) 1963 1964 1965Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1962.601 kb on + strand, within BWI76_RS09350at 1962.790 kb on - strand, within BWI76_RS09350at 1962.792 kb on + strand, within BWI76_RS09350at 1962.813 kb on + strand, within BWI76_RS09350at 1962.834 kb on - strand, within BWI76_RS09350at 1962.895 kb on + strand, within BWI76_RS09350at 1962.895 kb on + strand, within BWI76_RS09350at 1962.907 kb on + strand, within BWI76_RS09350at 1962.971 kb on + strand, within BWI76_RS09350at 1962.981 kb on + strand, within BWI76_RS09350at 1962.981 kb on + strand, within BWI76_RS09350at 1962.981 kb on + strand, within BWI76_RS09350at 1962.981 kb on + strand, within BWI76_RS09350at 1962.981 kb on + strand, within BWI76_RS09350at 1962.981 kb on + strand, within BWI76_RS09350at 1962.988 kb on + strand, within BWI76_RS09350at 1962.989 kb on - strand, within BWI76_RS09350at 1962.989 kb on - strand, within BWI76_RS09350at 1962.989 kb on - strand, within BWI76_RS09350at 1963.005 kb on + strand, within BWI76_RS09350at 1963.007 kb on + strand, within BWI76_RS09350at 1963.012 kb on + strand, within BWI76_RS09350at 1963.015 kb on - strand, within BWI76_RS09350at 1963.015 kb on - strand, within BWI76_RS09350at 1963.017 kb on + strand, within BWI76_RS09350at 1963.026 kb on - strand, within BWI76_RS09350at 1963.039 kb on + strand, within BWI76_RS09350at 1963.047 kb on - strand, within BWI76_RS09350at 1963.047 kb on - strand, within BWI76_RS09350at 1963.059 kb on + strand, within BWI76_RS09350at 1963.059 kb on + strand, within BWI76_RS09350at 1963.059 kb on + strand, within BWI76_RS09350at 1963.067 kb on - strand, within BWI76_RS09350at 1963.145 kb on + strand, within BWI76_RS09350at 1963.145 kb on + strand, within BWI76_RS09350at 1963.153 kb on - strand, within BWI76_RS09350at 1963.160 kb on - strand, within BWI76_RS09350at 1963.163 kb on - strand, within BWI76_RS09350at 1963.191 kb on + strand, within BWI76_RS09350at 1963.191 kb on + strand, within BWI76_RS09350at 1963.191 kb on + strand, within BWI76_RS09350at 1963.191 kb on + strand, within BWI76_RS09350at 1963.202 kb on + strand, within BWI76_RS09350at 1963.204 kb on - strand, within BWI76_RS09350at 1963.206 kb on + strand, within BWI76_RS09350at 1963.214 kb on - strand, within BWI76_RS09350at 1963.329 kb on + strandat 1963.336 kb on + strandat 1963.351 kb on + strandat 1963.407 kb on + strandat 1963.407 kb on + strandat 1963.407 kb on + strandat 1963.407 kb on + strandat 1963.417 kb on - strandat 1963.474 kb on + strandat 1963.489 kb on + strandat 1963.489 kb on + strandat 1963.489 kb on + strandat 1963.489 kb on + strandat 1963.567 kb on + strandat 1963.567 kb on + strandat 1963.575 kb on - strandat 1963.597 kb on + strandat 1963.598 kb on + strandat 1963.604 kb on + strandat 1963.609 kb on + strandat 1963.610 kb on + strandat 1963.610 kb on + strandat 1963.630 kb on - strand, within BWI76_RS09355at 1963.636 kb on + strandat 1963.639 kb on - strand, within BWI76_RS09355at 1963.668 kb on + strand, within BWI76_RS09355at 1963.668 kb on + strand, within BWI76_RS09355at 1963.668 kb on + strand, within BWI76_RS09355at 1963.676 kb on - strand, within BWI76_RS09355at 1963.676 kb on - strand, within BWI76_RS09355at 1963.676 kb on - strand, within BWI76_RS09355at 1963.676 kb on - strand, within BWI76_RS09355at 1963.686 kb on + strand, within BWI76_RS09355at 1963.690 kb on + strand, within BWI76_RS09355at 1963.690 kb on + strand, within BWI76_RS09355at 1963.697 kb on + strand, within BWI76_RS09355at 1963.707 kb on - strand, within BWI76_RS09355at 1963.712 kb on + strand, within BWI76_RS09355at 1963.713 kb on + strand, within BWI76_RS09355at 1963.720 kb on - strand, within BWI76_RS09355at 1963.733 kb on + strand, within BWI76_RS09355at 1963.733 kb on + strand, within BWI76_RS09355at 1963.735 kb on + strand, within BWI76_RS09355at 1963.735 kb on + strand, within BWI76_RS09355at 1963.743 kb on + strand, within BWI76_RS09355at 1963.759 kb on + strand, within BWI76_RS09355at 1963.787 kb on - strand, within BWI76_RS09355at 1963.792 kb on + strand, within BWI76_RS09355at 1963.792 kb on + strand, within BWI76_RS09355at 1963.800 kb on - strand, within BWI76_RS09355at 1963.800 kb on - strand, within BWI76_RS09355at 1963.800 kb on - strand, within BWI76_RS09355at 1963.854 kb on - strand, within BWI76_RS09355at 1963.856 kb on + strand, within BWI76_RS09355at 1963.877 kb on + strand, within BWI76_RS09355at 1963.890 kb on + strand, within BWI76_RS09355at 1963.940 kb on + strand, within BWI76_RS09355at 1964.165 kb on + strand, within BWI76_RS09355at 1964.167 kb on + strand, within BWI76_RS09355at 1964.173 kb on - strand, within BWI76_RS09355at 1964.177 kb on + strand, within BWI76_RS09355at 1964.177 kb on + strand, within BWI76_RS09355at 1964.182 kb on + strand, within BWI76_RS09355at 1964.196 kb on + strandat 1964.289 kb on + strandat 1964.297 kb on - strandat 1964.510 kb on + strand, within BWI76_RS09360at 1964.518 kb on - strand, within BWI76_RS09360at 1964.518 kb on - strand, within BWI76_RS09360at 1964.541 kb on - strand, within BWI76_RS09360at 1964.723 kb on - strand, within BWI76_RS09360at 1964.723 kb on - strand, within BWI76_RS09360at 1964.925 kb on + strand, within BWI76_RS09360at 1964.970 kb on - strand, within BWI76_RS09360

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
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1,962,601 + BWI76_RS09350 0.57 +0.2
1,962,790 - BWI76_RS09350 0.66 -2.1
1,962,792 + BWI76_RS09350 0.66 +0.9
1,962,813 + BWI76_RS09350 0.67 -2.1
1,962,834 - BWI76_RS09350 0.68 +2.5
1,962,895 + BWI76_RS09350 0.71 -0.7
1,962,895 + BWI76_RS09350 0.71 -1.8
1,962,907 + BWI76_RS09350 0.71 -1.1
1,962,971 + BWI76_RS09350 0.74 -2.3
1,962,981 + BWI76_RS09350 0.75 -0.0
1,962,981 + BWI76_RS09350 0.75 -0.5
1,962,981 + BWI76_RS09350 0.75 -1.1
1,962,981 + BWI76_RS09350 0.75 -0.6
1,962,981 + BWI76_RS09350 0.75 -2.2
1,962,981 + BWI76_RS09350 0.75 -2.5
1,962,988 + BWI76_RS09350 0.75 +0.9
1,962,989 - BWI76_RS09350 0.75 -0.7
1,962,989 - BWI76_RS09350 0.75 -0.6
1,962,989 - BWI76_RS09350 0.75 -0.7
1,963,005 + BWI76_RS09350 0.76 +1.7
1,963,007 + BWI76_RS09350 0.76 -1.5
1,963,012 + BWI76_RS09350 0.76 +0.2
1,963,015 - BWI76_RS09350 0.76 -0.3
1,963,015 - BWI76_RS09350 0.76 -0.1
1,963,017 + BWI76_RS09350 0.76 -0.2
1,963,026 - BWI76_RS09350 0.77 +0.7
1,963,039 + BWI76_RS09350 0.77 +0.0
1,963,047 - BWI76_RS09350 0.78 -2.1
1,963,047 - BWI76_RS09350 0.78 -2.6
1,963,059 + BWI76_RS09350 0.78 +1.7
1,963,059 + BWI76_RS09350 0.78 +0.8
1,963,059 + BWI76_RS09350 0.78 -1.8
1,963,067 - BWI76_RS09350 0.79 -1.7
1,963,145 + BWI76_RS09350 0.82 -0.2
1,963,145 + BWI76_RS09350 0.82 +0.7
1,963,153 - BWI76_RS09350 0.83 -0.8
1,963,160 - BWI76_RS09350 0.83 +0.4
1,963,163 - BWI76_RS09350 0.83 -1.9
1,963,191 + BWI76_RS09350 0.84 -1.1
1,963,191 + BWI76_RS09350 0.84 -0.5
1,963,191 + BWI76_RS09350 0.84 -1.5
1,963,191 + BWI76_RS09350 0.84 -0.7
1,963,202 + BWI76_RS09350 0.85 -1.2
1,963,204 - BWI76_RS09350 0.85 -0.3
1,963,206 + BWI76_RS09350 0.85 -2.4
1,963,214 - BWI76_RS09350 0.85 +1.1
1,963,329 + -0.5
1,963,336 + +1.1
1,963,351 + +0.3
1,963,407 + +2.1
1,963,407 + +0.6
1,963,407 + +1.3
1,963,407 + -0.0
1,963,417 - +1.7
1,963,474 + +0.9
1,963,489 + -0.8
1,963,489 + +0.3
1,963,489 + -2.0
1,963,489 + +0.1
1,963,567 + -3.0
1,963,567 + +0.7
1,963,575 - -0.0
1,963,597 + +1.9
1,963,598 + -1.4
1,963,604 + +0.7
1,963,609 + -0.8
1,963,610 + +0.6
1,963,610 + +0.6
1,963,630 - BWI76_RS09355 0.10 -0.5
1,963,636 + -0.0
1,963,639 - BWI76_RS09355 0.11 -1.0
1,963,668 + BWI76_RS09355 0.16 +0.5
1,963,668 + BWI76_RS09355 0.16 +0.9
1,963,668 + BWI76_RS09355 0.16 +0.7
1,963,676 - BWI76_RS09355 0.17 -1.4
1,963,676 - BWI76_RS09355 0.17 -1.5
1,963,676 - BWI76_RS09355 0.17 -0.0
1,963,676 - BWI76_RS09355 0.17 -0.5
1,963,686 + BWI76_RS09355 0.18 +0.0
1,963,690 + BWI76_RS09355 0.19 +1.7
1,963,690 + BWI76_RS09355 0.19 +0.5
1,963,697 + BWI76_RS09355 0.20 +0.3
1,963,707 - BWI76_RS09355 0.21 +0.9
1,963,712 + BWI76_RS09355 0.22 -1.0
1,963,713 + BWI76_RS09355 0.22 -1.0
1,963,720 - BWI76_RS09355 0.23 +0.8
1,963,733 + BWI76_RS09355 0.25 +0.9
1,963,733 + BWI76_RS09355 0.25 +0.2
1,963,735 + BWI76_RS09355 0.25 +1.2
1,963,735 + BWI76_RS09355 0.25 -1.9
1,963,743 + BWI76_RS09355 0.26 -1.7
1,963,759 + BWI76_RS09355 0.29 +0.7
1,963,787 - BWI76_RS09355 0.33 -1.5
1,963,792 + BWI76_RS09355 0.33 +1.3
1,963,792 + BWI76_RS09355 0.33 +1.2
1,963,800 - BWI76_RS09355 0.34 -3.0
1,963,800 - BWI76_RS09355 0.34 -0.8
1,963,800 - BWI76_RS09355 0.34 -4.2
1,963,854 - BWI76_RS09355 0.42 -0.3
1,963,856 + BWI76_RS09355 0.42 -0.5
1,963,877 + BWI76_RS09355 0.45 +0.4
1,963,890 + BWI76_RS09355 0.47 -0.0
1,963,940 + BWI76_RS09355 0.55 -0.4
1,964,165 + BWI76_RS09355 0.87 +0.3
1,964,167 + BWI76_RS09355 0.87 -0.0
1,964,173 - BWI76_RS09355 0.88 +2.3
1,964,177 + BWI76_RS09355 0.88 +1.2
1,964,177 + BWI76_RS09355 0.88 +0.2
1,964,182 + BWI76_RS09355 0.89 -0.3
1,964,196 + +0.9
1,964,289 + +0.7
1,964,297 - +0.2
1,964,510 + BWI76_RS09360 0.23 -0.9
1,964,518 - BWI76_RS09360 0.23 -3.1
1,964,518 - BWI76_RS09360 0.23 -3.9
1,964,541 - BWI76_RS09360 0.25 -1.1
1,964,723 - BWI76_RS09360 0.42 -1.4
1,964,723 - BWI76_RS09360 0.42 -0.4
1,964,925 + BWI76_RS09360 0.61 -2.3
1,964,970 - BWI76_RS09360 0.66 +0.6

Or see this region's nucleotide sequence