Experiment: L-Arginine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS01975 and BWI76_RS01980 are separated by 319 nucleotides BWI76_RS01980 and BWI76_RS01985 are separated by 145 nucleotides BWI76_RS01985 and BWI76_RS01990 are separated by 544 nucleotides
BWI76_RS01975: BWI76_RS01975 - outer membrane protein assembly factor BamA, at 405,031 to 407,454
_RS01975
BWI76_RS01980: BWI76_RS01980 - anti-adapter protein IraM, at 407,774 to 408,163
_RS01980
BWI76_RS01985: BWI76_RS01985 - membrane protein, at 408,309 to 408,590
_RS01985
BWI76_RS01990: BWI76_RS01990 - cyclic diguanylate phosphodiesterase, at 409,135 to 410,739
_RS01990
Position (kb) 408
409 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 407.317 kb on + strand at 407.317 kb on + strand at 407.317 kb on + strand at 407.325 kb on - strand at 407.325 kb on - strand at 407.325 kb on - strand at 407.336 kb on + strand at 407.338 kb on + strand at 407.341 kb on - strand at 407.346 kb on + strand at 407.346 kb on - strand at 407.354 kb on - strand at 407.356 kb on + strand at 407.356 kb on + strand at 407.357 kb on + strand at 407.368 kb on + strand at 407.370 kb on + strand at 407.376 kb on + strand at 407.376 kb on + strand at 407.376 kb on + strand at 407.384 kb on - strand at 407.409 kb on + strand at 407.409 kb on + strand at 407.409 kb on + strand at 407.409 kb on + strand at 407.409 kb on + strand at 407.409 kb on + strand at 407.409 kb on + strand at 407.409 kb on + strand at 407.409 kb on + strand at 407.409 kb on + strand at 407.409 kb on + strand at 407.409 kb on + strand at 407.409 kb on + strand at 407.409 kb on + strand at 407.414 kb on + strand at 407.414 kb on + strand at 407.414 kb on + strand at 407.414 kb on + strand at 407.414 kb on + strand at 407.416 kb on + strand at 407.417 kb on - strand at 407.417 kb on - strand at 407.417 kb on - strand at 407.417 kb on - strand at 407.417 kb on - strand at 407.417 kb on - strand at 407.417 kb on - strand at 407.417 kb on - strand at 407.417 kb on - strand at 407.417 kb on - strand at 407.417 kb on - strand at 407.417 kb on - strand at 407.422 kb on - strand at 407.422 kb on - strand at 407.422 kb on - strand at 407.422 kb on - strand at 407.422 kb on - strand at 407.424 kb on + strand at 407.424 kb on + strand at 407.468 kb on - strand at 407.471 kb on + strand at 407.476 kb on + strand at 407.476 kb on + strand at 407.479 kb on - strand at 407.482 kb on - strand at 407.507 kb on + strand at 407.507 kb on + strand at 407.507 kb on + strand at 407.507 kb on + strand at 407.507 kb on + strand at 407.507 kb on + strand at 407.507 kb on + strand at 407.507 kb on + strand at 407.507 kb on + strand at 407.507 kb on + strand at 407.507 kb on + strand at 407.507 kb on + strand at 407.507 kb on + strand at 407.507 kb on + strand at 407.515 kb on - strand at 407.515 kb on - strand at 407.515 kb on - strand at 407.520 kb on + strand at 407.520 kb on + strand at 407.520 kb on + strand at 407.520 kb on + strand at 407.527 kb on + strand at 407.527 kb on + strand at 407.527 kb on + strand at 407.528 kb on - strand at 407.528 kb on - strand at 407.528 kb on - strand at 407.530 kb on - strand at 407.538 kb on - strand at 407.575 kb on + strand at 407.583 kb on - strand at 407.583 kb on - strand at 407.594 kb on - strand at 407.639 kb on + strand at 407.639 kb on + strand at 407.639 kb on + strand at 407.647 kb on - strand at 407.651 kb on - strand at 407.653 kb on - strand at 407.655 kb on + strand at 407.655 kb on + strand at 407.655 kb on + strand at 407.655 kb on + strand at 407.663 kb on - strand at 407.663 kb on - strand at 407.663 kb on - strand at 407.663 kb on - strand at 407.663 kb on - strand at 407.663 kb on - strand at 407.663 kb on - strand at 407.663 kb on - strand at 407.710 kb on - strand at 407.714 kb on + strand at 407.715 kb on - strand at 407.719 kb on + strand at 407.722 kb on - strand at 407.727 kb on - strand at 407.729 kb on + strand at 407.731 kb on + strand at 407.737 kb on - strand at 407.755 kb on - strand at 407.760 kb on - strand at 407.784 kb on - strand at 407.786 kb on + strand at 407.786 kb on + strand at 407.794 kb on - strand at 407.794 kb on - strand at 407.794 kb on - strand at 407.794 kb on - strand at 407.794 kb on - strand at 407.795 kb on + strand at 407.795 kb on + strand at 407.795 kb on + strand at 407.810 kb on + strand at 407.840 kb on + strand, within BWI76_RS01980 at 407.849 kb on - strand, within BWI76_RS01980 at 407.909 kb on + strand, within BWI76_RS01980 at 407.919 kb on + strand, within BWI76_RS01980 at 407.919 kb on + strand, within BWI76_RS01980 at 407.927 kb on + strand, within BWI76_RS01980 at 407.935 kb on - strand, within BWI76_RS01980 at 407.952 kb on - strand, within BWI76_RS01980 at 407.960 kb on + strand, within BWI76_RS01980 at 407.960 kb on + strand, within BWI76_RS01980 at 407.960 kb on - strand, within BWI76_RS01980 at 407.982 kb on + strand, within BWI76_RS01980 at 407.990 kb on - strand, within BWI76_RS01980 at 407.994 kb on + strand, within BWI76_RS01980 at 407.998 kb on - strand, within BWI76_RS01980 at 408.000 kb on + strand, within BWI76_RS01980 at 408.000 kb on - strand, within BWI76_RS01980 at 408.013 kb on + strand, within BWI76_RS01980 at 408.016 kb on + strand, within BWI76_RS01980 at 408.045 kb on + strand, within BWI76_RS01980 at 408.052 kb on + strand, within BWI76_RS01980 at 408.052 kb on + strand, within BWI76_RS01980 at 408.052 kb on + strand, within BWI76_RS01980 at 408.054 kb on + strand, within BWI76_RS01980 at 408.060 kb on - strand, within BWI76_RS01980 at 408.060 kb on - strand, within BWI76_RS01980 at 408.073 kb on - strand, within BWI76_RS01980 at 408.113 kb on + strand, within BWI76_RS01980 at 408.113 kb on + strand, within BWI76_RS01980 at 408.113 kb on + strand, within BWI76_RS01980 at 408.121 kb on - strand, within BWI76_RS01980 at 408.121 kb on - strand, within BWI76_RS01980 at 408.126 kb on + strand at 408.134 kb on - strand at 408.166 kb on - strand at 408.200 kb on - strand at 408.208 kb on + strand at 408.208 kb on + strand at 408.247 kb on + strand at 408.255 kb on - strand at 408.255 kb on - strand at 408.265 kb on - strand at 408.283 kb on - strand at 408.394 kb on + strand, within BWI76_RS01985 at 408.449 kb on + strand, within BWI76_RS01985 at 408.449 kb on + strand, within BWI76_RS01985 at 408.457 kb on - strand, within BWI76_RS01985 at 408.457 kb on - strand, within BWI76_RS01985 at 408.470 kb on + strand, within BWI76_RS01985 at 408.498 kb on - strand at 408.528 kb on + strand, within BWI76_RS01985 at 408.528 kb on + strand, within BWI76_RS01985 at 408.528 kb on + strand, within BWI76_RS01985 at 408.541 kb on - strand, within BWI76_RS01985 at 408.546 kb on - strand, within BWI76_RS01985 at 408.553 kb on - strand, within BWI76_RS01985 at 408.563 kb on - strand at 408.592 kb on + strand at 408.654 kb on + strand at 408.772 kb on - strand at 408.880 kb on + strand at 408.939 kb on + strand at 409.009 kb on - strand at 409.030 kb on + strand at 409.035 kb on + strand at 409.038 kb on - strand at 409.043 kb on - strand at 409.049 kb on + strand at 409.049 kb on + strand at 409.062 kb on - strand at 409.062 kb on - strand at 409.088 kb on + strand at 409.088 kb on + strand at 409.088 kb on + strand at 409.088 kb on + strand at 409.096 kb on - strand at 409.102 kb on + strand at 409.102 kb on + strand at 409.102 kb on + strand at 409.102 kb on + strand at 409.110 kb on - strand at 409.110 kb on - strand at 409.110 kb on - strand at 409.110 kb on - strand at 409.110 kb on - strand at 409.137 kb on + strand at 409.180 kb on + strand at 409.180 kb on + strand at 409.184 kb on + strand at 409.194 kb on - strand at 409.204 kb on + strand at 409.217 kb on + strand at 409.222 kb on + strand at 409.235 kb on - strand at 409.329 kb on - strand, within BWI76_RS01990 at 409.374 kb on + strand, within BWI76_RS01990 at 409.381 kb on - strand, within BWI76_RS01990 at 409.404 kb on + strand, within BWI76_RS01990 at 409.412 kb on - strand, within BWI76_RS01990 at 409.412 kb on - strand, within BWI76_RS01990 at 409.417 kb on + strand, within BWI76_RS01990 at 409.571 kb on + strand, within BWI76_RS01990 at 409.571 kb on + strand, within BWI76_RS01990 at 409.579 kb on - strand, within BWI76_RS01990 at 409.579 kb on - strand, within BWI76_RS01990 at 409.579 kb on - strand, within BWI76_RS01990 at 409.579 kb on - strand, within BWI76_RS01990 at 409.579 kb on - strand, within BWI76_RS01990
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine (N) remove 407,317 + +0.4 407,317 + -3.3 407,317 + +3.2 407,325 - +0.9 407,325 - -1.8 407,325 - -1.0 407,336 + +1.7 407,338 + -2.0 407,341 - -0.5 407,346 + -1.0 407,346 - +2.9 407,354 - -0.3 407,356 + -0.1 407,356 + +0.2 407,357 + +1.4 407,368 + +0.0 407,370 + -2.1 407,376 + +0.2 407,376 + +0.1 407,376 + +2.8 407,384 - +1.1 407,409 + -1.5 407,409 + -1.3 407,409 + +0.5 407,409 + -0.8 407,409 + -0.0 407,409 + +1.1 407,409 + +0.4 407,409 + -0.1 407,409 + +0.1 407,409 + -0.7 407,409 + +0.6 407,409 + +0.2 407,409 + +0.0 407,409 + -1.0 407,414 + -2.3 407,414 + -1.6 407,414 + -1.7 407,414 + -1.5 407,414 + -1.3 407,416 + -1.4 407,417 - +0.2 407,417 - +1.0 407,417 - -1.3 407,417 - -0.2 407,417 - -1.0 407,417 - -0.8 407,417 - +1.4 407,417 - -2.8 407,417 - -2.7 407,417 - +2.0 407,417 - -1.7 407,417 - -0.1 407,422 - -0.6 407,422 - +0.8 407,422 - +0.3 407,422 - -0.2 407,422 - +0.8 407,424 + -1.1 407,424 + +0.2 407,468 - +1.6 407,471 + +2.6 407,476 + -1.3 407,476 + -0.6 407,479 - +0.4 407,482 - +1.0 407,507 + -0.3 407,507 + +0.1 407,507 + -0.2 407,507 + -0.0 407,507 + +0.5 407,507 + +0.5 407,507 + -3.3 407,507 + -0.7 407,507 + -0.4 407,507 + +1.2 407,507 + +0.4 407,507 + +1.0 407,507 + -0.4 407,507 + +0.3 407,515 - +0.6 407,515 - -0.8 407,515 - +1.1 407,520 + -1.0 407,520 + -2.6 407,520 + -0.1 407,520 + -1.7 407,527 + +0.7 407,527 + -0.9 407,527 + -2.6 407,528 - -0.1 407,528 - +1.9 407,528 - -0.9 407,530 - +2.4 407,538 - -0.7 407,575 + +0.3 407,583 - -2.4 407,583 - +2.1 407,594 - +0.1 407,639 + -0.6 407,639 + -3.4 407,639 + +0.4 407,647 - -1.3 407,651 - +0.4 407,653 - -2.9 407,655 + +0.1 407,655 + -0.2 407,655 + -1.9 407,655 + -2.4 407,663 - -0.6 407,663 - +2.4 407,663 - +0.8 407,663 - +0.1 407,663 - -0.4 407,663 - -2.7 407,663 - -0.4 407,663 - -0.1 407,710 - +0.4 407,714 + -0.5 407,715 - +0.3 407,719 + -0.8 407,722 - +1.7 407,727 - +0.3 407,729 + -0.8 407,731 + +0.5 407,737 - +0.7 407,755 - +0.4 407,760 - +1.8 407,784 - +0.7 407,786 + +0.9 407,786 + -1.0 407,794 - +1.8 407,794 - +0.8 407,794 - -0.2 407,794 - -1.7 407,794 - -2.0 407,795 + -0.8 407,795 + -2.7 407,795 + -0.3 407,810 + +1.2 407,840 + BWI76_RS01980 0.17 -0.7 407,849 - BWI76_RS01980 0.19 -1.5 407,909 + BWI76_RS01980 0.35 +0.2 407,919 + BWI76_RS01980 0.37 -1.1 407,919 + BWI76_RS01980 0.37 -0.1 407,927 + BWI76_RS01980 0.39 -0.6 407,935 - BWI76_RS01980 0.41 -0.5 407,952 - BWI76_RS01980 0.46 +0.1 407,960 + BWI76_RS01980 0.48 -0.2 407,960 + BWI76_RS01980 0.48 +0.8 407,960 - BWI76_RS01980 0.48 +0.4 407,982 + BWI76_RS01980 0.53 +0.0 407,990 - BWI76_RS01980 0.55 -0.4 407,994 + BWI76_RS01980 0.56 -2.0 407,998 - BWI76_RS01980 0.57 -1.5 408,000 + BWI76_RS01980 0.58 +0.6 408,000 - BWI76_RS01980 0.58 -0.5 408,013 + BWI76_RS01980 0.61 -0.3 408,016 + BWI76_RS01980 0.62 +1.0 408,045 + BWI76_RS01980 0.69 -0.4 408,052 + BWI76_RS01980 0.71 -0.9 408,052 + BWI76_RS01980 0.71 +0.9 408,052 + BWI76_RS01980 0.71 +1.0 408,054 + BWI76_RS01980 0.72 -0.6 408,060 - BWI76_RS01980 0.73 -1.8 408,060 - BWI76_RS01980 0.73 -2.0 408,073 - BWI76_RS01980 0.77 -0.1 408,113 + BWI76_RS01980 0.87 -2.6 408,113 + BWI76_RS01980 0.87 +1.1 408,113 + BWI76_RS01980 0.87 -1.7 408,121 - BWI76_RS01980 0.89 +0.5 408,121 - BWI76_RS01980 0.89 -2.1 408,126 + -0.2 408,134 - -1.5 408,166 - -3.5 408,200 - -0.2 408,208 + -1.1 408,208 + -2.2 408,247 + +0.9 408,255 - -0.6 408,255 - +1.1 408,265 - -1.0 408,283 - +0.6 408,394 + BWI76_RS01985 0.30 -0.0 408,449 + BWI76_RS01985 0.50 -0.1 408,449 + BWI76_RS01985 0.50 -0.6 408,457 - BWI76_RS01985 0.52 +0.4 408,457 - BWI76_RS01985 0.52 -1.2 408,470 + BWI76_RS01985 0.57 -1.8 408,498 - +0.8 408,528 + BWI76_RS01985 0.78 -0.6 408,528 + BWI76_RS01985 0.78 -1.2 408,528 + BWI76_RS01985 0.78 -0.9 408,541 - BWI76_RS01985 0.82 -1.2 408,546 - BWI76_RS01985 0.84 -1.7 408,553 - BWI76_RS01985 0.87 +0.5 408,563 - -0.2 408,592 + +0.8 408,654 + +1.4 408,772 - +4.9 408,880 + +0.4 408,939 + -0.2 409,009 - -2.7 409,030 + +0.6 409,035 + -0.4 409,038 - +1.8 409,043 - +0.7 409,049 + +0.9 409,049 + -0.0 409,062 - +0.8 409,062 - +0.4 409,088 + -0.2 409,088 + +0.6 409,088 + -1.9 409,088 + +0.8 409,096 - -0.3 409,102 + +0.4 409,102 + -0.4 409,102 + -0.2 409,102 + +0.0 409,110 - -1.9 409,110 - -0.4 409,110 - -0.3 409,110 - -0.6 409,110 - -1.6 409,137 + +0.2 409,180 + -2.9 409,180 + +0.8 409,184 + -1.1 409,194 - -0.0 409,204 + +0.6 409,217 + -2.4 409,222 + +0.3 409,235 - +0.7 409,329 - BWI76_RS01990 0.12 +0.7 409,374 + BWI76_RS01990 0.15 -2.0 409,381 - BWI76_RS01990 0.15 -2.8 409,404 + BWI76_RS01990 0.17 -0.5 409,412 - BWI76_RS01990 0.17 -2.5 409,412 - BWI76_RS01990 0.17 +0.2 409,417 + BWI76_RS01990 0.18 +0.0 409,571 + BWI76_RS01990 0.27 +0.4 409,571 + BWI76_RS01990 0.27 -0.6 409,579 - BWI76_RS01990 0.28 -0.1 409,579 - BWI76_RS01990 0.28 -1.0 409,579 - BWI76_RS01990 0.28 -0.3 409,579 - BWI76_RS01990 0.28 +0.8 409,579 - BWI76_RS01990 0.28 -1.2
Or see this region's nucleotide sequence