Experiment: L-Arginine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS00675 and BWI76_RS00680 overlap by 4 nucleotides BWI76_RS00680 and BWI76_RS00685 are separated by 159 nucleotides BWI76_RS00685 and BWI76_RS00690 are separated by 50 nucleotides
BWI76_RS00675: BWI76_RS00675 - L-rhamnose isomerase (EC 5.3.1.14) <small>(from data)</small>, at 137,946 to 139,205
_RS00675
BWI76_RS00680: BWI76_RS00680 - Rhamnulokinase (EC 2.7.1.5) <small>(from data)</small>, at 139,202 to 140,668
_RS00680
BWI76_RS00685: BWI76_RS00685 - ABC transporter ATP-binding protein, at 140,828 to 140,929
_RS00685
BWI76_RS00690: BWI76_RS00690 - transcriptional activator RhaS, at 140,980 to 141,816
_RS00690
Position (kb) 139
140
141 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 138.211 kb on + strand, within BWI76_RS00675 at 138.225 kb on - strand, within BWI76_RS00675 at 138.375 kb on - strand, within BWI76_RS00675 at 138.501 kb on - strand, within BWI76_RS00675 at 138.501 kb on - strand, within BWI76_RS00675 at 138.530 kb on + strand, within BWI76_RS00675 at 138.543 kb on - strand, within BWI76_RS00675 at 138.543 kb on - strand, within BWI76_RS00675 at 138.563 kb on - strand, within BWI76_RS00675 at 138.715 kb on + strand, within BWI76_RS00675 at 138.723 kb on - strand, within BWI76_RS00675 at 138.738 kb on - strand, within BWI76_RS00675 at 138.757 kb on + strand, within BWI76_RS00675 at 138.767 kb on + strand, within BWI76_RS00675 at 138.767 kb on + strand at 138.775 kb on - strand, within BWI76_RS00675 at 138.775 kb on - strand, within BWI76_RS00675 at 138.775 kb on - strand, within BWI76_RS00675 at 138.821 kb on + strand, within BWI76_RS00675 at 138.973 kb on - strand, within BWI76_RS00675 at 138.973 kb on - strand, within BWI76_RS00675 at 138.998 kb on - strand, within BWI76_RS00675 at 139.031 kb on - strand, within BWI76_RS00675 at 139.130 kb on - strand at 139.186 kb on + strand at 139.228 kb on - strand at 139.238 kb on - strand at 139.276 kb on + strand at 139.385 kb on + strand, within BWI76_RS00680 at 139.436 kb on - strand, within BWI76_RS00680 at 139.438 kb on + strand, within BWI76_RS00680 at 139.530 kb on + strand, within BWI76_RS00680 at 139.540 kb on + strand, within BWI76_RS00680 at 139.565 kb on + strand, within BWI76_RS00680 at 139.836 kb on - strand, within BWI76_RS00680 at 140.084 kb on + strand, within BWI76_RS00680 at 140.181 kb on - strand, within BWI76_RS00680 at 140.190 kb on - strand, within BWI76_RS00680 at 140.233 kb on + strand, within BWI76_RS00680 at 140.315 kb on + strand, within BWI76_RS00680 at 140.575 kb on + strand at 140.575 kb on + strand at 140.582 kb on + strand at 140.583 kb on - strand at 140.708 kb on - strand at 140.777 kb on + strand at 140.785 kb on - strand at 140.985 kb on - strand at 140.985 kb on - strand at 140.986 kb on + strand at 140.986 kb on + strand at 140.986 kb on + strand at 140.986 kb on + strand at 141.138 kb on + strand, within BWI76_RS00690 at 141.138 kb on + strand, within BWI76_RS00690 at 141.138 kb on + strand, within BWI76_RS00690 at 141.226 kb on + strand, within BWI76_RS00690 at 141.328 kb on + strand, within BWI76_RS00690 at 141.368 kb on + strand, within BWI76_RS00690 at 141.369 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine (N) remove 138,211 + BWI76_RS00675 0.21 +1.2 138,225 - BWI76_RS00675 0.22 +0.6 138,375 - BWI76_RS00675 0.34 -0.1 138,501 - BWI76_RS00675 0.44 -0.2 138,501 - BWI76_RS00675 0.44 +0.9 138,530 + BWI76_RS00675 0.46 -4.4 138,543 - BWI76_RS00675 0.47 +0.4 138,543 - BWI76_RS00675 0.47 -1.0 138,563 - BWI76_RS00675 0.49 -0.5 138,715 + BWI76_RS00675 0.61 -0.1 138,723 - BWI76_RS00675 0.62 -0.3 138,738 - BWI76_RS00675 0.63 -0.0 138,757 + BWI76_RS00675 0.64 -1.1 138,767 + BWI76_RS00675 0.65 +0.1 138,767 + +0.5 138,775 - BWI76_RS00675 0.66 -0.1 138,775 - BWI76_RS00675 0.66 -0.0 138,775 - BWI76_RS00675 0.66 +0.1 138,821 + BWI76_RS00675 0.69 -0.1 138,973 - BWI76_RS00675 0.82 +1.0 138,973 - BWI76_RS00675 0.82 +0.2 138,998 - BWI76_RS00675 0.83 -1.3 139,031 - BWI76_RS00675 0.86 +1.1 139,130 - +0.8 139,186 + -0.1 139,228 - -1.4 139,238 - -2.8 139,276 + +0.2 139,385 + BWI76_RS00680 0.12 +2.8 139,436 - BWI76_RS00680 0.16 -0.2 139,438 + BWI76_RS00680 0.16 -0.5 139,530 + BWI76_RS00680 0.22 +0.1 139,540 + BWI76_RS00680 0.23 +0.4 139,565 + BWI76_RS00680 0.25 -0.7 139,836 - BWI76_RS00680 0.43 -1.6 140,084 + BWI76_RS00680 0.60 +0.3 140,181 - BWI76_RS00680 0.67 -0.9 140,190 - BWI76_RS00680 0.67 -2.4 140,233 + BWI76_RS00680 0.70 -0.5 140,315 + BWI76_RS00680 0.76 -0.7 140,575 + -0.5 140,575 + +0.2 140,582 + -0.8 140,583 - +0.4 140,708 - -0.1 140,777 + +0.7 140,785 - +0.0 140,985 - -0.3 140,985 - +0.0 140,986 + +0.8 140,986 + -0.4 140,986 + +0.1 140,986 + -0.2 141,138 + BWI76_RS00690 0.19 +0.5 141,138 + BWI76_RS00690 0.19 -0.6 141,138 + BWI76_RS00690 0.19 -0.4 141,226 + BWI76_RS00690 0.29 -0.4 141,328 + BWI76_RS00690 0.42 -1.0 141,368 + BWI76_RS00690 0.46 -0.2 141,369 + +2.3
Or see this region's nucleotide sequence