Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3628

Experiment: m.b. Fusidic 0.0006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3626 and Dshi_3627 overlap by 29 nucleotidesDshi_3627 and Dshi_3628 are separated by 353 nucleotidesDshi_3628 and Dshi_3629 are separated by 239 nucleotides Dshi_3626: Dshi_3626 - cation diffusion facilitator family transporter (RefSeq), at 27,154 to 28,119 _3626 Dshi_3627: Dshi_3627 - hypothetical protein (RefSeq), at 28,091 to 28,402 _3627 Dshi_3628: Dshi_3628 - hypothetical protein (RefSeq), at 28,756 to 29,451 _3628 Dshi_3629: Dshi_3629 - integrase family protein (RefSeq), at 29,691 to 30,563 _3629 Position (kb) 28 29 30Strain fitness (log2 ratio) -2 -1 0 1 2at 28.731 kb on + strandat 28.744 kb on - strandat 28.746 kb on + strandat 28.754 kb on - strandat 28.777 kb on + strandat 28.793 kb on + strandat 28.793 kb on + strandat 28.793 kb on - strandat 28.814 kb on + strandat 28.824 kb on + strandat 28.824 kb on + strandat 28.824 kb on + strandat 28.832 kb on - strandat 28.832 kb on - strand, within Dshi_3628at 28.832 kb on - strand, within Dshi_3628at 28.832 kb on - strand, within Dshi_3628at 28.832 kb on - strand, within Dshi_3628at 28.832 kb on - strand, within Dshi_3628at 28.832 kb on - strand, within Dshi_3628at 28.832 kb on - strand, within Dshi_3628at 28.832 kb on - strand, within Dshi_3628at 28.832 kb on - strand, within Dshi_3628at 28.832 kb on - strand, within Dshi_3628at 28.839 kb on + strand, within Dshi_3628at 28.845 kb on + strand, within Dshi_3628at 28.845 kb on + strand, within Dshi_3628at 28.853 kb on - strand, within Dshi_3628at 28.853 kb on - strand, within Dshi_3628at 28.869 kb on + strand, within Dshi_3628at 28.870 kb on + strand, within Dshi_3628at 28.870 kb on + strand, within Dshi_3628at 28.872 kb on + strand, within Dshi_3628at 28.878 kb on - strand, within Dshi_3628at 28.878 kb on - strand, within Dshi_3628at 28.878 kb on - strand, within Dshi_3628at 28.879 kb on - strand, within Dshi_3628at 28.900 kb on + strand, within Dshi_3628at 28.901 kb on - strand, within Dshi_3628at 28.974 kb on + strand, within Dshi_3628at 28.980 kb on + strand, within Dshi_3628at 28.997 kb on + strand, within Dshi_3628at 28.997 kb on + strand, within Dshi_3628at 29.001 kb on + strand, within Dshi_3628at 29.005 kb on - strand, within Dshi_3628at 29.022 kb on + strand, within Dshi_3628at 29.022 kb on + strand, within Dshi_3628at 29.040 kb on - strand, within Dshi_3628at 29.066 kb on + strand, within Dshi_3628at 29.066 kb on + strand, within Dshi_3628at 29.066 kb on + strand, within Dshi_3628at 29.074 kb on - strand, within Dshi_3628at 29.092 kb on + strand, within Dshi_3628at 29.100 kb on - strand, within Dshi_3628at 29.104 kb on + strand, within Dshi_3628at 29.131 kb on + strand, within Dshi_3628at 29.131 kb on + strand, within Dshi_3628at 29.131 kb on + strand, within Dshi_3628at 29.131 kb on + strand, within Dshi_3628at 29.139 kb on - strand, within Dshi_3628at 29.139 kb on - strand, within Dshi_3628at 29.139 kb on - strand, within Dshi_3628at 29.162 kb on + strand, within Dshi_3628at 29.169 kb on + strand, within Dshi_3628at 29.175 kb on - strand, within Dshi_3628at 29.175 kb on - strand, within Dshi_3628at 29.177 kb on - strand, within Dshi_3628at 29.187 kb on - strand, within Dshi_3628at 29.193 kb on + strand, within Dshi_3628at 29.263 kb on - strand, within Dshi_3628at 29.268 kb on - strand, within Dshi_3628at 29.276 kb on - strand, within Dshi_3628at 29.286 kb on - strand, within Dshi_3628at 29.302 kb on + strand, within Dshi_3628at 29.309 kb on + strand, within Dshi_3628at 29.310 kb on - strand, within Dshi_3628at 29.317 kb on - strand, within Dshi_3628at 29.325 kb on - strand, within Dshi_3628at 29.328 kb on + strand, within Dshi_3628at 29.331 kb on - strand, within Dshi_3628at 29.333 kb on - strand, within Dshi_3628at 29.338 kb on + strand, within Dshi_3628at 29.343 kb on - strand, within Dshi_3628at 29.344 kb on + strand, within Dshi_3628at 29.345 kb on + strand, within Dshi_3628at 29.345 kb on + strand, within Dshi_3628at 29.345 kb on + strand, within Dshi_3628at 29.345 kb on + strand, within Dshi_3628at 29.346 kb on - strand, within Dshi_3628at 29.347 kb on + strand, within Dshi_3628at 29.347 kb on + strand, within Dshi_3628at 29.348 kb on - strand, within Dshi_3628at 29.352 kb on + strand, within Dshi_3628at 29.352 kb on - strand, within Dshi_3628at 29.353 kb on - strand, within Dshi_3628at 29.353 kb on - strand, within Dshi_3628at 29.353 kb on - strand, within Dshi_3628at 29.353 kb on - strand, within Dshi_3628at 29.355 kb on - strand, within Dshi_3628at 29.355 kb on - strand, within Dshi_3628at 29.360 kb on - strand, within Dshi_3628at 29.367 kb on - strand, within Dshi_3628at 29.411 kb on + strandat 29.418 kb on + strandat 29.418 kb on + strandat 29.426 kb on - strandat 29.429 kb on + strandat 29.437 kb on - strandat 29.439 kb on + strandat 29.439 kb on + strandat 29.445 kb on + strandat 29.445 kb on - strandat 29.447 kb on - strandat 29.447 kb on - strandat 29.447 kb on - strandat 29.449 kb on - strandat 29.456 kb on + strandat 29.458 kb on + strandat 29.464 kb on - strandat 29.464 kb on - strandat 29.464 kb on - strandat 29.464 kb on - strandat 29.464 kb on - strandat 29.472 kb on + strandat 29.487 kb on + strandat 29.501 kb on + strandat 29.509 kb on - strandat 29.510 kb on + strandat 29.515 kb on - strandat 29.528 kb on + strandat 29.542 kb on + strandat 29.542 kb on + strandat 29.542 kb on + strandat 29.542 kb on + strandat 29.550 kb on - strandat 29.550 kb on - strandat 29.550 kb on - strandat 29.555 kb on - strandat 29.587 kb on - strandat 29.587 kb on - strandat 29.587 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0006 mg/ml
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28,731 + -1.1
28,744 - +0.0
28,746 + -2.0
28,754 - -0.4
28,777 + +1.2
28,793 + +0.5
28,793 + +0.1
28,793 - -0.8
28,814 + -0.9
28,824 + +0.6
28,824 + +0.0
28,824 + +0.6
28,832 - +0.2
28,832 - Dshi_3628 0.11 +0.5
28,832 - Dshi_3628 0.11 -0.5
28,832 - Dshi_3628 0.11 +1.8
28,832 - Dshi_3628 0.11 -1.0
28,832 - Dshi_3628 0.11 +0.6
28,832 - Dshi_3628 0.11 +0.6
28,832 - Dshi_3628 0.11 -1.0
28,832 - Dshi_3628 0.11 +0.7
28,832 - Dshi_3628 0.11 -1.1
28,832 - Dshi_3628 0.11 -1.0
28,839 + Dshi_3628 0.12 -0.1
28,845 + Dshi_3628 0.13 +0.2
28,845 + Dshi_3628 0.13 -0.7
28,853 - Dshi_3628 0.14 +0.2
28,853 - Dshi_3628 0.14 -0.2
28,869 + Dshi_3628 0.16 -0.6
28,870 + Dshi_3628 0.16 +1.8
28,870 + Dshi_3628 0.16 +0.0
28,872 + Dshi_3628 0.17 +0.6
28,878 - Dshi_3628 0.18 +0.3
28,878 - Dshi_3628 0.18 +0.8
28,878 - Dshi_3628 0.18 +0.2
28,879 - Dshi_3628 0.18 +0.5
28,900 + Dshi_3628 0.21 +0.4
28,901 - Dshi_3628 0.21 -1.9
28,974 + Dshi_3628 0.31 +0.3
28,980 + Dshi_3628 0.32 +0.7
28,997 + Dshi_3628 0.35 -1.1
28,997 + Dshi_3628 0.35 -0.3
29,001 + Dshi_3628 0.35 +0.5
29,005 - Dshi_3628 0.36 +0.2
29,022 + Dshi_3628 0.38 +0.5
29,022 + Dshi_3628 0.38 -0.2
29,040 - Dshi_3628 0.41 -0.5
29,066 + Dshi_3628 0.45 -0.0
29,066 + Dshi_3628 0.45 +2.1
29,066 + Dshi_3628 0.45 +0.3
29,074 - Dshi_3628 0.46 -1.6
29,092 + Dshi_3628 0.48 +0.6
29,100 - Dshi_3628 0.49 +0.5
29,104 + Dshi_3628 0.50 +0.3
29,131 + Dshi_3628 0.54 -0.5
29,131 + Dshi_3628 0.54 +2.2
29,131 + Dshi_3628 0.54 +0.7
29,131 + Dshi_3628 0.54 +0.7
29,139 - Dshi_3628 0.55 -1.2
29,139 - Dshi_3628 0.55 -0.8
29,139 - Dshi_3628 0.55 +2.5
29,162 + Dshi_3628 0.58 +1.6
29,169 + Dshi_3628 0.59 +0.1
29,175 - Dshi_3628 0.60 +1.3
29,175 - Dshi_3628 0.60 +0.3
29,177 - Dshi_3628 0.60 +0.6
29,187 - Dshi_3628 0.62 +0.2
29,193 + Dshi_3628 0.63 +0.6
29,263 - Dshi_3628 0.73 -0.1
29,268 - Dshi_3628 0.74 -0.0
29,276 - Dshi_3628 0.75 +0.7
29,286 - Dshi_3628 0.76 +0.8
29,302 + Dshi_3628 0.78 +0.8
29,309 + Dshi_3628 0.79 +0.2
29,310 - Dshi_3628 0.80 +0.4
29,317 - Dshi_3628 0.81 -0.0
29,325 - Dshi_3628 0.82 +0.3
29,328 + Dshi_3628 0.82 +0.5
29,331 - Dshi_3628 0.83 +0.2
29,333 - Dshi_3628 0.83 -0.6
29,338 + Dshi_3628 0.84 -0.5
29,343 - Dshi_3628 0.84 -1.2
29,344 + Dshi_3628 0.84 +0.6
29,345 + Dshi_3628 0.85 -0.6
29,345 + Dshi_3628 0.85 +0.5
29,345 + Dshi_3628 0.85 -1.8
29,345 + Dshi_3628 0.85 -0.3
29,346 - Dshi_3628 0.85 +1.2
29,347 + Dshi_3628 0.85 -0.6
29,347 + Dshi_3628 0.85 -1.0
29,348 - Dshi_3628 0.85 -0.8
29,352 + Dshi_3628 0.86 +0.3
29,352 - Dshi_3628 0.86 +0.3
29,353 - Dshi_3628 0.86 +1.0
29,353 - Dshi_3628 0.86 -1.0
29,353 - Dshi_3628 0.86 +0.2
29,353 - Dshi_3628 0.86 -0.5
29,355 - Dshi_3628 0.86 +0.6
29,355 - Dshi_3628 0.86 -0.3
29,360 - Dshi_3628 0.87 -0.3
29,367 - Dshi_3628 0.88 -1.1
29,411 + -0.4
29,418 + -0.4
29,418 + -1.0
29,426 - +0.1
29,429 + -1.0
29,437 - +0.1
29,439 + +0.1
29,439 + +0.3
29,445 + -1.0
29,445 - +0.8
29,447 - -0.6
29,447 - -1.6
29,447 - +0.9
29,449 - -0.6
29,456 + +0.9
29,458 + -0.9
29,464 - -0.9
29,464 - -0.8
29,464 - +0.6
29,464 - -0.4
29,464 - +0.2
29,472 + -1.0
29,487 + -0.0
29,501 + -0.5
29,509 - -0.6
29,510 + -0.6
29,515 - +0.0
29,528 + -0.0
29,542 + +0.5
29,542 + +0.3
29,542 + -0.8
29,542 + +0.4
29,550 - +1.2
29,550 - -0.6
29,550 - +1.1
29,555 - +0.0
29,587 - +0.2
29,587 - -0.3
29,587 - +0.4

Or see this region's nucleotide sequence