Experiment: m.b. Fusidic 0.0006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3077 and Dshi_3078 are separated by 63 nucleotides Dshi_3078 and Dshi_3079 overlap by 4 nucleotides Dshi_3079 and Dshi_3080 are separated by 93 nucleotides
Dshi_3077: Dshi_3077 - hypothetical protein (RefSeq), at 3,245,223 to 3,246,209
_3077
Dshi_3078: Dshi_3078 - AzlC family protein (RefSeq), at 3,246,273 to 3,246,977
_3078
Dshi_3079: Dshi_3079 - branched-chain amino acid transport (RefSeq), at 3,246,974 to 3,247,306
_3079
Dshi_3080: Dshi_3080 - efflux transporter, RND family, MFP subunit (RefSeq), at 3,247,400 to 3,248,863
_3080
Position (kb)
3246
3247 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3245.521 kb on + strand, within Dshi_3077 at 3245.672 kb on + strand, within Dshi_3077 at 3245.792 kb on + strand, within Dshi_3077 at 3245.792 kb on + strand, within Dshi_3077 at 3245.805 kb on - strand, within Dshi_3077 at 3246.122 kb on - strand at 3246.217 kb on + strand at 3246.270 kb on + strand at 3246.369 kb on - strand at 3246.491 kb on - strand, within Dshi_3078 at 3246.607 kb on - strand, within Dshi_3078 at 3246.726 kb on - strand, within Dshi_3078 at 3246.819 kb on - strand, within Dshi_3078 at 3246.881 kb on - strand, within Dshi_3078 at 3247.018 kb on + strand, within Dshi_3079 at 3247.310 kb on - strand at 3247.310 kb on - strand at 3247.365 kb on + strand at 3247.368 kb on - strand at 3247.368 kb on - strand at 3247.384 kb on - strand at 3247.391 kb on + strand at 3247.481 kb on - strand at 3247.551 kb on - strand, within Dshi_3080 at 3247.566 kb on + strand, within Dshi_3080 at 3247.574 kb on - strand, within Dshi_3080 at 3247.629 kb on - strand, within Dshi_3080 at 3247.637 kb on - strand, within Dshi_3080 at 3247.670 kb on + strand, within Dshi_3080 at 3247.690 kb on + strand, within Dshi_3080 at 3247.723 kb on - strand, within Dshi_3080 at 3247.787 kb on + strand, within Dshi_3080 at 3247.815 kb on + strand, within Dshi_3080 at 3247.948 kb on + strand, within Dshi_3080
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0006 mg/ml remove 3,245,521 + Dshi_3077 0.30 -0.0 3,245,672 + Dshi_3077 0.45 -0.6 3,245,792 + Dshi_3077 0.58 -0.4 3,245,792 + Dshi_3077 0.58 -0.1 3,245,805 - Dshi_3077 0.59 -0.3 3,246,122 - +1.0 3,246,217 + -0.2 3,246,270 + +1.4 3,246,369 - -0.0 3,246,491 - Dshi_3078 0.31 -0.5 3,246,607 - Dshi_3078 0.47 +0.2 3,246,726 - Dshi_3078 0.64 +0.7 3,246,819 - Dshi_3078 0.77 +0.8 3,246,881 - Dshi_3078 0.86 +0.4 3,247,018 + Dshi_3079 0.13 -0.1 3,247,310 - +0.3 3,247,310 - -0.6 3,247,365 + -0.8 3,247,368 - -0.6 3,247,368 - -0.7 3,247,384 - -0.5 3,247,391 + -0.4 3,247,481 - +0.9 3,247,551 - Dshi_3080 0.10 -0.7 3,247,566 + Dshi_3080 0.11 +0.1 3,247,574 - Dshi_3080 0.12 -1.0 3,247,629 - Dshi_3080 0.16 -0.0 3,247,637 - Dshi_3080 0.16 -1.2 3,247,670 + Dshi_3080 0.18 -0.1 3,247,690 + Dshi_3080 0.20 -0.8 3,247,723 - Dshi_3080 0.22 -0.5 3,247,787 + Dshi_3080 0.26 -1.7 3,247,815 + Dshi_3080 0.28 -1.2 3,247,948 + Dshi_3080 0.37 -2.8
Or see this region's nucleotide sequence