Experiment: m.b. Fusidic 0.0006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1938 and Dshi_1939 are separated by 116 nucleotides Dshi_1939 and Dshi_1940 are separated by 39 nucleotides Dshi_1940 and Dshi_1941 are separated by 50 nucleotides
Dshi_1938: Dshi_1938 - tRNA pseudouridine synthase A (RefSeq), at 2,027,520 to 2,028,293
_1938
Dshi_1939: Dshi_1939 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 2,028,410 to 2,029,231
_1939
Dshi_1940: Dshi_1940 - ABC transporter related (RefSeq), at 2,029,271 to 2,030,071
_1940
Dshi_1941: Dshi_1941 - NMT1/THI5 like domain protein (RefSeq), at 2,030,122 to 2,031,135
_1941
Position (kb)
2029
2030
2031 Strain fitness (log2 ratio)
-1
0
1
2 at 2028.580 kb on - strand, within Dshi_1939 at 2028.596 kb on - strand, within Dshi_1939 at 2028.678 kb on + strand, within Dshi_1939 at 2028.866 kb on - strand, within Dshi_1939 at 2028.966 kb on - strand, within Dshi_1939 at 2028.985 kb on - strand, within Dshi_1939 at 2029.024 kb on + strand, within Dshi_1939 at 2029.107 kb on - strand, within Dshi_1939 at 2029.148 kb on + strand, within Dshi_1939 at 2029.154 kb on - strand at 2029.173 kb on - strand at 2029.212 kb on + strand at 2029.261 kb on + strand at 2029.281 kb on + strand at 2029.373 kb on + strand, within Dshi_1940 at 2029.518 kb on - strand, within Dshi_1940 at 2029.658 kb on - strand, within Dshi_1940 at 2029.658 kb on - strand, within Dshi_1940 at 2029.774 kb on + strand, within Dshi_1940 at 2029.784 kb on + strand, within Dshi_1940 at 2030.003 kb on - strand at 2030.041 kb on - strand at 2030.106 kb on + strand at 2030.259 kb on - strand, within Dshi_1941 at 2030.313 kb on - strand, within Dshi_1941 at 2030.407 kb on + strand, within Dshi_1941 at 2030.416 kb on - strand, within Dshi_1941 at 2030.574 kb on + strand, within Dshi_1941 at 2030.920 kb on - strand, within Dshi_1941 at 2030.991 kb on - strand, within Dshi_1941
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0006 mg/ml remove 2,028,580 - Dshi_1939 0.21 +0.2 2,028,596 - Dshi_1939 0.23 -0.5 2,028,678 + Dshi_1939 0.33 +0.5 2,028,866 - Dshi_1939 0.55 -1.5 2,028,966 - Dshi_1939 0.68 -0.6 2,028,985 - Dshi_1939 0.70 -0.4 2,029,024 + Dshi_1939 0.75 -1.4 2,029,107 - Dshi_1939 0.85 -0.0 2,029,148 + Dshi_1939 0.90 -0.5 2,029,154 - -0.2 2,029,173 - -0.3 2,029,212 + -1.1 2,029,261 + +0.2 2,029,281 + -0.1 2,029,373 + Dshi_1940 0.13 -0.9 2,029,518 - Dshi_1940 0.31 -0.8 2,029,658 - Dshi_1940 0.48 -1.1 2,029,658 - Dshi_1940 0.48 +0.6 2,029,774 + Dshi_1940 0.63 -0.4 2,029,784 + Dshi_1940 0.64 -1.6 2,030,003 - -0.4 2,030,041 - +1.0 2,030,106 + +0.0 2,030,259 - Dshi_1941 0.14 -0.4 2,030,313 - Dshi_1941 0.19 -1.2 2,030,407 + Dshi_1941 0.28 +0.3 2,030,416 - Dshi_1941 0.29 -0.1 2,030,574 + Dshi_1941 0.45 +0.4 2,030,920 - Dshi_1941 0.79 +1.8 2,030,991 - Dshi_1941 0.86 +0.3
Or see this region's nucleotide sequence