Experiment: m.b. Fusidic 0.0006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1427 and Dshi_1428 are separated by 93 nucleotides Dshi_1428 and Dshi_1429 are separated by 150 nucleotides Dshi_1429 and Dshi_1430 are separated by 15 nucleotides
Dshi_1427: Dshi_1427 - Citrate CoA-transferase (RefSeq), at 1,481,361 to 1,482,908
_1427
Dshi_1428: Dshi_1428 - glucose-methanol-choline oxidoreductase (RefSeq), at 1,483,002 to 1,484,636
_1428
Dshi_1429: Dshi_1429 - short-chain dehydrogenase/reductase SDR (RefSeq), at 1,484,787 to 1,485,557
_1429
Dshi_1430: Dshi_1430 - aldehyde dehydrogenase (RefSeq), at 1,485,573 to 1,487,036
_1430
Position (kb)
1483
1484
1485 Strain fitness (log2 ratio)
-1
0
1 at 1482.086 kb on + strand, within Dshi_1427 at 1482.302 kb on - strand, within Dshi_1427 at 1482.606 kb on + strand, within Dshi_1427 at 1482.742 kb on + strand, within Dshi_1427 at 1482.828 kb on + strand at 1482.843 kb on + strand at 1482.851 kb on - strand at 1482.865 kb on + strand at 1482.929 kb on - strand at 1482.943 kb on + strand at 1482.960 kb on + strand at 1482.987 kb on - strand at 1483.063 kb on - strand at 1483.136 kb on + strand at 1483.145 kb on + strand at 1483.324 kb on + strand, within Dshi_1428 at 1483.463 kb on - strand, within Dshi_1428 at 1483.491 kb on + strand, within Dshi_1428 at 1483.533 kb on + strand, within Dshi_1428 at 1483.560 kb on + strand, within Dshi_1428 at 1483.676 kb on - strand, within Dshi_1428 at 1483.736 kb on + strand, within Dshi_1428 at 1483.744 kb on - strand, within Dshi_1428 at 1483.804 kb on + strand, within Dshi_1428 at 1483.841 kb on + strand, within Dshi_1428 at 1483.849 kb on - strand, within Dshi_1428 at 1483.968 kb on + strand, within Dshi_1428 at 1483.968 kb on + strand, within Dshi_1428 at 1483.998 kb on - strand, within Dshi_1428 at 1484.070 kb on + strand, within Dshi_1428 at 1484.091 kb on + strand, within Dshi_1428 at 1484.249 kb on + strand, within Dshi_1428 at 1484.384 kb on - strand, within Dshi_1428 at 1484.437 kb on + strand, within Dshi_1428 at 1484.535 kb on - strand at 1484.603 kb on + strand at 1484.651 kb on + strand at 1484.652 kb on + strand at 1484.784 kb on + strand at 1484.793 kb on - strand at 1484.851 kb on - strand at 1484.919 kb on - strand, within Dshi_1429 at 1484.931 kb on + strand, within Dshi_1429 at 1484.978 kb on + strand, within Dshi_1429 at 1485.006 kb on + strand, within Dshi_1429 at 1485.008 kb on + strand, within Dshi_1429 at 1485.016 kb on - strand, within Dshi_1429 at 1485.037 kb on - strand, within Dshi_1429 at 1485.081 kb on - strand, within Dshi_1429 at 1485.087 kb on + strand, within Dshi_1429 at 1485.111 kb on - strand, within Dshi_1429 at 1485.173 kb on + strand, within Dshi_1429 at 1485.250 kb on - strand, within Dshi_1429 at 1485.359 kb on - strand, within Dshi_1429 at 1485.418 kb on + strand, within Dshi_1429 at 1485.436 kb on + strand, within Dshi_1429
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0006 mg/ml remove 1,482,086 + Dshi_1427 0.47 -0.2 1,482,302 - Dshi_1427 0.61 +0.6 1,482,606 + Dshi_1427 0.80 +1.3 1,482,742 + Dshi_1427 0.89 +0.1 1,482,828 + -0.2 1,482,843 + -0.3 1,482,851 - -0.4 1,482,865 + +0.2 1,482,929 - +0.3 1,482,943 + +1.3 1,482,960 + -0.0 1,482,987 - +0.6 1,483,063 - +0.0 1,483,136 + -0.4 1,483,145 + +0.3 1,483,324 + Dshi_1428 0.20 -0.2 1,483,463 - Dshi_1428 0.28 -0.5 1,483,491 + Dshi_1428 0.30 +0.9 1,483,533 + Dshi_1428 0.32 +0.2 1,483,560 + Dshi_1428 0.34 +0.5 1,483,676 - Dshi_1428 0.41 +1.3 1,483,736 + Dshi_1428 0.45 +1.0 1,483,744 - Dshi_1428 0.45 +1.0 1,483,804 + Dshi_1428 0.49 -0.3 1,483,841 + Dshi_1428 0.51 +0.3 1,483,849 - Dshi_1428 0.52 -0.2 1,483,968 + Dshi_1428 0.59 -0.6 1,483,968 + Dshi_1428 0.59 -0.3 1,483,998 - Dshi_1428 0.61 +0.4 1,484,070 + Dshi_1428 0.65 -0.0 1,484,091 + Dshi_1428 0.67 -0.2 1,484,249 + Dshi_1428 0.76 -0.9 1,484,384 - Dshi_1428 0.85 -0.3 1,484,437 + Dshi_1428 0.88 -0.2 1,484,535 - +1.0 1,484,603 + -0.2 1,484,651 + +0.3 1,484,652 + +0.2 1,484,784 + +0.3 1,484,793 - -0.1 1,484,851 - +0.6 1,484,919 - Dshi_1429 0.17 -0.0 1,484,931 + Dshi_1429 0.19 -0.3 1,484,978 + Dshi_1429 0.25 +0.1 1,485,006 + Dshi_1429 0.28 -0.5 1,485,008 + Dshi_1429 0.29 +1.3 1,485,016 - Dshi_1429 0.30 +0.2 1,485,037 - Dshi_1429 0.32 -1.3 1,485,081 - Dshi_1429 0.38 +0.4 1,485,087 + Dshi_1429 0.39 -0.2 1,485,111 - Dshi_1429 0.42 -0.0 1,485,173 + Dshi_1429 0.50 +0.0 1,485,250 - Dshi_1429 0.60 -0.1 1,485,359 - Dshi_1429 0.74 -0.3 1,485,418 + Dshi_1429 0.82 +1.5 1,485,436 + Dshi_1429 0.84 -0.2
Or see this region's nucleotide sequence