Experiment: m.b. Fusidic 0.0006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1349 and Dshi_1350 are separated by 138 nucleotides Dshi_1350 and Dshi_1351 are separated by 149 nucleotides Dshi_1351 and Dshi_1352 overlap by 4 nucleotides Dshi_1352 and Dshi_1353 are separated by 651 nucleotides
Dshi_1349: Dshi_1349 - ABC transporter related (RefSeq), at 1,400,718 to 1,402,574
_1349
Dshi_1350: Dshi_1350 - Nucleoside-diphosphate kinase (RefSeq), at 1,402,713 to 1,403,135
_1350
Dshi_1351: Dshi_1351 - hypothetical protein (RefSeq), at 1,403,285 to 1,403,677
_1351
Dshi_1352: Dshi_1352 - TfoX domain protein (RefSeq), at 1,403,674 to 1,404,003
_1352
Dshi_1353: Dshi_1353 - extracellular solute-binding protein family 1 (RefSeq), at 1,404,655 to 1,405,959
_1353
Position (kb)
1403
1404 Strain fitness (log2 ratio)
-1
0
1 at 1402.298 kb on - strand, within Dshi_1349 at 1402.414 kb on - strand at 1402.571 kb on + strand at 1403.282 kb on + strand at 1403.485 kb on - strand, within Dshi_1351 at 1403.553 kb on + strand, within Dshi_1351 at 1403.755 kb on - strand, within Dshi_1352 at 1403.755 kb on - strand, within Dshi_1352 at 1403.937 kb on - strand, within Dshi_1352 at 1404.089 kb on + strand at 1404.089 kb on + strand at 1404.101 kb on + strand at 1404.180 kb on + strand at 1404.188 kb on - strand at 1404.471 kb on - strand at 1404.480 kb on - strand at 1404.595 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0006 mg/ml remove 1,402,298 - Dshi_1349 0.85 -0.6 1,402,414 - -1.1 1,402,571 + -1.2 1,403,282 + +0.4 1,403,485 - Dshi_1351 0.51 -0.5 1,403,553 + Dshi_1351 0.68 -0.5 1,403,755 - Dshi_1352 0.25 -0.8 1,403,755 - Dshi_1352 0.25 +0.0 1,403,937 - Dshi_1352 0.80 -0.2 1,404,089 + -0.0 1,404,089 + +0.2 1,404,101 + -0.0 1,404,180 + +0.6 1,404,188 - +0.3 1,404,471 - -0.0 1,404,480 - -1.6 1,404,595 + -0.1
Or see this region's nucleotide sequence