Experiment: m.b. Fusidic 0.0006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1347 and Dshi_1348 are separated by 44 nucleotides Dshi_1348 and Dshi_1349 are separated by 46 nucleotides Dshi_1349 and Dshi_1350 are separated by 138 nucleotides Dshi_1350 and Dshi_1351 are separated by 149 nucleotides
Dshi_1347: Dshi_1347 - hypothetical protein (RefSeq), at 1,399,416 to 1,400,000
_1347
Dshi_1348: Dshi_1348 - multiple antibiotic resistance (MarC)-related protein (RefSeq), at 1,400,045 to 1,400,671
_1348
Dshi_1349: Dshi_1349 - ABC transporter related (RefSeq), at 1,400,718 to 1,402,574
_1349
Dshi_1350: Dshi_1350 - Nucleoside-diphosphate kinase (RefSeq), at 1,402,713 to 1,403,135
_1350
Dshi_1351: Dshi_1351 - hypothetical protein (RefSeq), at 1,403,285 to 1,403,677
_1351
Position (kb)
1400
1401
1402
1403 Strain fitness (log2 ratio)
-2
-1
0
1 at 1399.734 kb on + strand, within Dshi_1347 at 1399.852 kb on + strand, within Dshi_1347 at 1400.012 kb on - strand at 1400.257 kb on - strand, within Dshi_1348 at 1400.485 kb on - strand, within Dshi_1348 at 1400.507 kb on - strand, within Dshi_1348 at 1400.579 kb on - strand, within Dshi_1348 at 1401.283 kb on - strand, within Dshi_1349 at 1401.303 kb on - strand, within Dshi_1349 at 1401.681 kb on + strand, within Dshi_1349 at 1401.931 kb on - strand, within Dshi_1349 at 1402.005 kb on + strand, within Dshi_1349 at 1402.172 kb on + strand, within Dshi_1349 at 1402.298 kb on - strand, within Dshi_1349 at 1402.414 kb on - strand at 1402.571 kb on + strand at 1403.282 kb on + strand at 1403.485 kb on - strand, within Dshi_1351 at 1403.553 kb on + strand, within Dshi_1351
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0006 mg/ml remove 1,399,734 + Dshi_1347 0.54 -0.1 1,399,852 + Dshi_1347 0.75 +0.5 1,400,012 - +0.5 1,400,257 - Dshi_1348 0.34 +0.3 1,400,485 - Dshi_1348 0.70 -0.1 1,400,507 - Dshi_1348 0.74 -2.7 1,400,579 - Dshi_1348 0.85 +0.0 1,401,283 - Dshi_1349 0.30 -0.9 1,401,303 - Dshi_1349 0.32 -0.9 1,401,681 + Dshi_1349 0.52 -0.3 1,401,931 - Dshi_1349 0.65 -0.4 1,402,005 + Dshi_1349 0.69 -0.4 1,402,172 + Dshi_1349 0.78 -0.4 1,402,298 - Dshi_1349 0.85 -0.6 1,402,414 - -1.1 1,402,571 + -1.2 1,403,282 + +0.4 1,403,485 - Dshi_1351 0.51 -0.5 1,403,553 + Dshi_1351 0.68 -0.5
Or see this region's nucleotide sequence