Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1160

Experiment: m.b. Fusidic 0.0006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1158 and Dshi_1159 are separated by 444 nucleotidesDshi_1159 and Dshi_1160 are separated by 4 nucleotidesDshi_1160 and Dshi_1161 are separated by 64 nucleotides Dshi_1158: Dshi_1158 - Inosine/uridine-preferring nucleoside hydrolase (RefSeq), at 1,184,225 to 1,185,181 _1158 Dshi_1159: Dshi_1159 - hypothetical protein (RefSeq), at 1,185,626 to 1,186,144 _1159 Dshi_1160: Dshi_1160 - MazG family protein (RefSeq), at 1,186,149 to 1,186,988 _1160 Dshi_1161: Dshi_1161 - amidohydrolase (RefSeq), at 1,187,053 to 1,188,213 _1161 Position (kb) 1186 1187Strain fitness (log2 ratio) -1 0 1at 1185.163 kb on + strandat 1185.163 kb on + strandat 1185.238 kb on - strandat 1185.513 kb on + strandat 1185.521 kb on - strandat 1185.911 kb on - strand, within Dshi_1159at 1185.990 kb on + strand, within Dshi_1159at 1185.990 kb on + strand, within Dshi_1159at 1185.998 kb on - strand, within Dshi_1159at 1186.065 kb on + strand, within Dshi_1159at 1186.098 kb on - strandat 1186.103 kb on - strandat 1186.240 kb on + strand, within Dshi_1160at 1186.487 kb on + strand, within Dshi_1160at 1186.824 kb on + strand, within Dshi_1160at 1186.832 kb on - strand, within Dshi_1160at 1186.832 kb on - strand, within Dshi_1160at 1186.856 kb on - strand, within Dshi_1160at 1186.884 kb on + strand, within Dshi_1160at 1187.019 kb on + strandat 1187.039 kb on + strandat 1187.044 kb on + strandat 1187.087 kb on - strandat 1187.107 kb on - strandat 1187.110 kb on + strandat 1187.123 kb on + strandat 1187.233 kb on + strand, within Dshi_1161at 1187.487 kb on - strand, within Dshi_1161at 1187.497 kb on + strand, within Dshi_1161at 1187.511 kb on + strand, within Dshi_1161at 1187.712 kb on - strand, within Dshi_1161at 1187.877 kb on + strand, within Dshi_1161

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0006 mg/ml
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1,185,163 + -0.5
1,185,163 + +1.2
1,185,238 - +0.4
1,185,513 + -0.4
1,185,521 - -0.8
1,185,911 - Dshi_1159 0.55 -0.4
1,185,990 + Dshi_1159 0.70 -0.1
1,185,990 + Dshi_1159 0.70 -0.4
1,185,998 - Dshi_1159 0.72 +0.9
1,186,065 + Dshi_1159 0.85 +0.4
1,186,098 - +0.4
1,186,103 - -1.2
1,186,240 + Dshi_1160 0.11 +0.6
1,186,487 + Dshi_1160 0.40 -0.9
1,186,824 + Dshi_1160 0.80 -0.6
1,186,832 - Dshi_1160 0.81 -0.4
1,186,832 - Dshi_1160 0.81 -0.6
1,186,856 - Dshi_1160 0.84 -0.0
1,186,884 + Dshi_1160 0.88 -0.3
1,187,019 + +0.0
1,187,039 + +0.1
1,187,044 + -1.4
1,187,087 - +0.1
1,187,107 - +0.6
1,187,110 + -0.1
1,187,123 + -0.5
1,187,233 + Dshi_1161 0.16 -0.2
1,187,487 - Dshi_1161 0.37 +1.6
1,187,497 + Dshi_1161 0.38 +0.8
1,187,511 + Dshi_1161 0.39 -0.8
1,187,712 - Dshi_1161 0.57 -0.3
1,187,877 + Dshi_1161 0.71 +0.1

Or see this region's nucleotide sequence