Experiment: m.b. Fusidic 0.0006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0887 and Dshi_0888 are separated by 7 nucleotides Dshi_0888 and Dshi_0889 are separated by 14 nucleotides Dshi_0889 and Dshi_0890 are separated by 106 nucleotides
Dshi_0887: Dshi_0887 - Serine--glyoxylate transaminase (RefSeq), at 902,124 to 903,314
_0887
Dshi_0888: Dshi_0888 - Pyridoxal-5'-phosphate-dependent protein beta subunit (RefSeq), at 903,322 to 904,296
_0888
Dshi_0889: Dshi_0889 - alanine racemase domain protein (RefSeq), at 904,311 to 905,474
_0889
Dshi_0890: Dshi_0890 - Ornithine cyclodeaminase (RefSeq), at 905,581 to 906,573
_0890
Position (kb) 904
905
906 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 903.387 kb on + strand at 903.395 kb on - strand at 903.405 kb on + strand at 903.410 kb on + strand at 903.410 kb on + strand at 903.414 kb on + strand at 903.428 kb on - strand, within Dshi_0888 at 903.444 kb on + strand, within Dshi_0888 at 903.536 kb on + strand, within Dshi_0888 at 903.544 kb on - strand, within Dshi_0888 at 903.581 kb on + strand, within Dshi_0888 at 903.756 kb on - strand, within Dshi_0888 at 903.830 kb on + strand, within Dshi_0888 at 903.891 kb on + strand, within Dshi_0888 at 903.913 kb on - strand, within Dshi_0888 at 903.942 kb on - strand, within Dshi_0888 at 903.953 kb on + strand, within Dshi_0888 at 903.999 kb on + strand, within Dshi_0888 at 904.056 kb on - strand, within Dshi_0888 at 904.099 kb on - strand, within Dshi_0888 at 904.099 kb on - strand, within Dshi_0888 at 904.099 kb on - strand, within Dshi_0888 at 904.173 kb on + strand, within Dshi_0888 at 904.186 kb on - strand, within Dshi_0888 at 904.186 kb on - strand, within Dshi_0888 at 904.199 kb on - strand at 904.250 kb on - strand at 904.290 kb on + strand at 904.291 kb on + strand at 904.295 kb on + strand at 904.299 kb on - strand at 904.337 kb on + strand at 904.425 kb on + strand at 904.561 kb on + strand, within Dshi_0889 at 904.561 kb on + strand, within Dshi_0889 at 904.592 kb on - strand, within Dshi_0889 at 904.623 kb on + strand, within Dshi_0889 at 905.066 kb on + strand, within Dshi_0889 at 905.067 kb on + strand, within Dshi_0889 at 905.077 kb on + strand, within Dshi_0889 at 905.085 kb on - strand, within Dshi_0889 at 905.218 kb on + strand, within Dshi_0889 at 905.313 kb on - strand, within Dshi_0889 at 905.356 kb on - strand, within Dshi_0889 at 905.402 kb on - strand at 905.402 kb on - strand at 905.413 kb on - strand at 905.473 kb on - strand at 905.486 kb on + strand at 905.530 kb on + strand at 905.576 kb on + strand at 905.653 kb on + strand at 905.708 kb on - strand, within Dshi_0890 at 905.715 kb on - strand, within Dshi_0890 at 905.802 kb on - strand, within Dshi_0890 at 905.808 kb on + strand, within Dshi_0890 at 905.859 kb on + strand, within Dshi_0890 at 905.867 kb on - strand, within Dshi_0890 at 905.948 kb on + strand, within Dshi_0890 at 905.954 kb on - strand, within Dshi_0890 at 905.956 kb on - strand, within Dshi_0890 at 905.968 kb on - strand, within Dshi_0890 at 906.003 kb on + strand, within Dshi_0890 at 906.013 kb on + strand, within Dshi_0890 at 906.026 kb on + strand, within Dshi_0890 at 906.026 kb on - strand, within Dshi_0890 at 906.245 kb on + strand, within Dshi_0890 at 906.258 kb on - strand, within Dshi_0890 at 906.258 kb on - strand, within Dshi_0890 at 906.258 kb on - strand, within Dshi_0890 at 906.281 kb on - strand, within Dshi_0890 at 906.324 kb on - strand, within Dshi_0890 at 906.468 kb on - strand, within Dshi_0890
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0006 mg/ml remove 903,387 + -1.2 903,395 - -0.3 903,405 + -0.4 903,410 + -2.4 903,410 + -0.9 903,414 + +0.7 903,428 - Dshi_0888 0.11 +0.1 903,444 + Dshi_0888 0.13 +0.2 903,536 + Dshi_0888 0.22 -0.2 903,544 - Dshi_0888 0.23 -1.1 903,581 + Dshi_0888 0.27 +0.2 903,756 - Dshi_0888 0.45 -0.3 903,830 + Dshi_0888 0.52 -0.5 903,891 + Dshi_0888 0.58 -0.2 903,913 - Dshi_0888 0.61 -0.6 903,942 - Dshi_0888 0.64 +0.3 903,953 + Dshi_0888 0.65 +1.2 903,999 + Dshi_0888 0.69 -0.5 904,056 - Dshi_0888 0.75 -0.2 904,099 - Dshi_0888 0.80 +0.2 904,099 - Dshi_0888 0.80 -0.2 904,099 - Dshi_0888 0.80 +0.5 904,173 + Dshi_0888 0.87 +0.3 904,186 - Dshi_0888 0.89 -1.8 904,186 - Dshi_0888 0.89 -1.6 904,199 - +0.1 904,250 - -0.4 904,290 + -0.6 904,291 + +3.1 904,295 + -0.3 904,299 - +0.6 904,337 + -0.1 904,425 + -0.4 904,561 + Dshi_0889 0.21 +1.5 904,561 + Dshi_0889 0.21 -1.5 904,592 - Dshi_0889 0.24 -0.2 904,623 + Dshi_0889 0.27 -1.3 905,066 + Dshi_0889 0.65 -0.2 905,067 + Dshi_0889 0.65 -0.3 905,077 + Dshi_0889 0.66 -0.5 905,085 - Dshi_0889 0.66 -0.2 905,218 + Dshi_0889 0.78 -1.1 905,313 - Dshi_0889 0.86 +0.3 905,356 - Dshi_0889 0.90 -1.0 905,402 - -1.0 905,402 - -0.1 905,413 - -0.2 905,473 - +0.9 905,486 + -0.7 905,530 + -0.2 905,576 + -0.1 905,653 + +0.3 905,708 - Dshi_0890 0.13 +0.5 905,715 - Dshi_0890 0.13 -0.0 905,802 - Dshi_0890 0.22 -0.2 905,808 + Dshi_0890 0.23 +0.2 905,859 + Dshi_0890 0.28 -0.8 905,867 - Dshi_0890 0.29 -0.4 905,948 + Dshi_0890 0.37 -1.1 905,954 - Dshi_0890 0.38 +1.0 905,956 - Dshi_0890 0.38 -0.1 905,968 - Dshi_0890 0.39 -0.3 906,003 + Dshi_0890 0.42 -0.1 906,013 + Dshi_0890 0.44 -1.7 906,026 + Dshi_0890 0.45 +0.2 906,026 - Dshi_0890 0.45 -0.0 906,245 + Dshi_0890 0.67 -0.8 906,258 - Dshi_0890 0.68 +0.2 906,258 - Dshi_0890 0.68 -0.5 906,258 - Dshi_0890 0.68 -0.6 906,281 - Dshi_0890 0.70 +1.9 906,324 - Dshi_0890 0.75 +0.9 906,468 - Dshi_0890 0.89 -1.3
Or see this region's nucleotide sequence