Experiment: m.b. Fusidic 0.0006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0019 and Dshi_0020 are separated by 613 nucleotides Dshi_0020 and Dshi_0021 overlap by 47 nucleotides Dshi_0021 and Dshi_0022 are separated by 22 nucleotides Dshi_0022 and Dshi_0023 are separated by 43 nucleotides
Dshi_0019: Dshi_0019 - GTP-binding protein TypA (RefSeq), at 22,866 to 24,683
_0019
Dshi_0020: Dshi_0020 - putative transcriptional regulator, CadC (RefSeq), at 25,297 to 26,019
_0020
Dshi_0021: Dshi_0021 - hypothetical protein (RefSeq), at 25,973 to 26,377
_0021
Dshi_0022: Dshi_0022 - hypothetical protein (RefSeq), at 26,400 to 26,954
_0022
Dshi_0023: Dshi_0023 - Ribonuclease H (RefSeq), at 26,998 to 27,618
_0023
Position (kb) 25
26
27 Strain fitness (log2 ratio) -2
-1
0
1 at 24.361 kb on + strand, within Dshi_0019 at 24.384 kb on + strand, within Dshi_0019 at 24.392 kb on - strand, within Dshi_0019 at 24.409 kb on + strand, within Dshi_0019 at 24.428 kb on - strand, within Dshi_0019 at 24.559 kb on + strand at 24.561 kb on - strand at 24.567 kb on - strand at 24.830 kb on + strand at 25.040 kb on + strand at 25.118 kb on - strand at 25.240 kb on + strand at 25.552 kb on - strand, within Dshi_0020 at 25.605 kb on + strand, within Dshi_0020 at 25.658 kb on + strand, within Dshi_0020 at 25.773 kb on - strand, within Dshi_0020 at 25.809 kb on - strand, within Dshi_0020 at 25.814 kb on - strand, within Dshi_0020 at 25.987 kb on + strand at 26.214 kb on - strand, within Dshi_0021 at 26.232 kb on - strand, within Dshi_0021 at 26.360 kb on + strand at 26.457 kb on - strand, within Dshi_0022 at 26.578 kb on - strand, within Dshi_0022 at 26.578 kb on - strand, within Dshi_0022 at 26.642 kb on + strand, within Dshi_0022 at 26.665 kb on + strand, within Dshi_0022 at 26.679 kb on - strand, within Dshi_0022 at 26.864 kb on - strand, within Dshi_0022 at 26.883 kb on + strand, within Dshi_0022 at 26.928 kb on - strand at 26.995 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0006 mg/ml remove 24,361 + Dshi_0019 0.82 +1.1 24,384 + Dshi_0019 0.83 +0.4 24,392 - Dshi_0019 0.84 +0.4 24,409 + Dshi_0019 0.85 +0.3 24,428 - Dshi_0019 0.86 -0.1 24,559 + -0.2 24,561 - -0.4 24,567 - -1.2 24,830 + +0.6 25,040 + -1.9 25,118 - -0.1 25,240 + +0.2 25,552 - Dshi_0020 0.35 -0.8 25,605 + Dshi_0020 0.43 -0.4 25,658 + Dshi_0020 0.50 -1.7 25,773 - Dshi_0020 0.66 +0.5 25,809 - Dshi_0020 0.71 +0.4 25,814 - Dshi_0020 0.72 +0.6 25,987 + -0.3 26,214 - Dshi_0021 0.60 -1.2 26,232 - Dshi_0021 0.64 -1.2 26,360 + -0.8 26,457 - Dshi_0022 0.10 +0.2 26,578 - Dshi_0022 0.32 -0.9 26,578 - Dshi_0022 0.32 -0.4 26,642 + Dshi_0022 0.44 -1.6 26,665 + Dshi_0022 0.48 -0.8 26,679 - Dshi_0022 0.50 +0.4 26,864 - Dshi_0022 0.84 -0.9 26,883 + Dshi_0022 0.87 +0.3 26,928 - -0.1 26,995 + +0.3
Or see this region's nucleotide sequence