Experiment: m.b. Fusidic 0.0006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0012 and Dshi_0013 overlap by 4 nucleotides Dshi_0013 and Dshi_0014 overlap by 1 nucleotides Dshi_0014 and Dshi_0015 are separated by 200 nucleotides
Dshi_0012: Dshi_0012 - succinyl-diaminopimelate desuccinylase (RefSeq), at 13,129 to 14,268
_0012
Dshi_0013: Dshi_0013 - GCN5-related N-acetyltransferase (RefSeq), at 14,265 to 14,693
_0013
Dshi_0014: Dshi_0014 - hypothetical protein (RefSeq), at 14,693 to 15,271
_0014
Dshi_0015: Dshi_0015 - ribonuclease R (RefSeq), at 15,472 to 17,727
_0015
Position (kb) 14
15 Strain fitness (log2 ratio) -1
0
1 at 14.307 kb on - strand at 14.342 kb on + strand, within Dshi_0013 at 14.528 kb on - strand, within Dshi_0013 at 14.591 kb on + strand, within Dshi_0013 at 14.624 kb on - strand, within Dshi_0013 at 14.729 kb on + strand at 14.783 kb on + strand, within Dshi_0014 at 14.849 kb on - strand, within Dshi_0014 at 14.898 kb on - strand, within Dshi_0014 at 14.967 kb on + strand, within Dshi_0014 at 15.068 kb on + strand, within Dshi_0014 at 15.076 kb on - strand, within Dshi_0014 at 15.140 kb on + strand, within Dshi_0014 at 15.292 kb on - strand at 15.324 kb on + strand at 15.390 kb on + strand at 15.398 kb on - strand at 15.399 kb on - strand at 15.616 kb on + strand at 15.616 kb on + strand at 15.658 kb on + strand at 15.666 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0006 mg/ml remove 14,307 - +0.6 14,342 + Dshi_0013 0.18 +0.3 14,528 - Dshi_0013 0.61 +1.1 14,591 + Dshi_0013 0.76 +1.0 14,624 - Dshi_0013 0.84 -0.4 14,729 + +1.4 14,783 + Dshi_0014 0.16 +0.4 14,849 - Dshi_0014 0.27 -1.0 14,898 - Dshi_0014 0.35 -0.6 14,967 + Dshi_0014 0.47 -0.1 15,068 + Dshi_0014 0.65 +0.4 15,076 - Dshi_0014 0.66 +0.3 15,140 + Dshi_0014 0.77 -0.6 15,292 - +0.1 15,324 + +0.4 15,390 + -0.9 15,398 - -0.4 15,399 - -1.2 15,616 + -0.1 15,616 + +0.1 15,658 + +0.4 15,666 - -1.3
Or see this region's nucleotide sequence