Experiment: Cholin acetate 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0802 and SO0804 are separated by 293 nucleotides SO0804 and SO0805 are separated by 79 nucleotides SO0805 and SO0806 are separated by 177 nucleotides
SO0802: SO0802 - MATE efflux family protein (NCBI ptt file), at 814,692 to 816,053
SO0802
SO0804: SO0804 - hypothetical protein (NCBI ptt file), at 816,347 to 816,952
SO0804
SO0805: SO0805 - CBS domain protein (NCBI ptt file), at 817,032 to 817,550
SO0805
SO0806: SO0806 - alkaline phosphatase, putative (NCBI ptt file), at 817,728 to 819,494
SO0806
Position (kb) 816
817 Strain fitness (log2 ratio) -1
0
1
2 at 815.369 kb on + strand, within SO0802 at 815.377 kb on - strand, within SO0802 at 815.384 kb on + strand, within SO0802 at 815.444 kb on - strand, within SO0802 at 815.486 kb on + strand, within SO0802 at 815.498 kb on + strand, within SO0802 at 815.498 kb on + strand, within SO0802 at 815.506 kb on - strand, within SO0802 at 815.506 kb on - strand, within SO0802 at 815.506 kb on - strand, within SO0802 at 815.506 kb on - strand, within SO0802 at 815.508 kb on + strand, within SO0802 at 815.508 kb on + strand, within SO0802 at 815.508 kb on + strand, within SO0802 at 815.508 kb on + strand, within SO0802 at 815.579 kb on + strand, within SO0802 at 815.619 kb on - strand, within SO0802 at 815.717 kb on - strand, within SO0802 at 815.749 kb on - strand, within SO0802 at 815.865 kb on - strand, within SO0802 at 815.881 kb on + strand, within SO0802 at 815.923 kb on - strand at 815.931 kb on - strand at 816.410 kb on - strand, within SO0804 at 816.479 kb on + strand, within SO0804 at 816.490 kb on + strand, within SO0804 at 816.601 kb on - strand, within SO0804 at 816.643 kb on - strand, within SO0804 at 816.685 kb on - strand, within SO0804 at 816.694 kb on - strand, within SO0804 at 816.814 kb on + strand, within SO0804 at 816.893 kb on + strand at 816.893 kb on + strand at 816.893 kb on + strand at 816.893 kb on + strand at 816.901 kb on - strand at 816.901 kb on - strand at 816.901 kb on - strand at 816.901 kb on - strand at 816.901 kb on - strand at 816.901 kb on - strand at 816.901 kb on - strand at 816.986 kb on + strand at 816.986 kb on + strand at 816.994 kb on - strand at 817.022 kb on + strand at 817.029 kb on + strand at 817.030 kb on - strand at 817.054 kb on + strand at 817.062 kb on - strand at 817.090 kb on - strand, within SO0805 at 817.165 kb on + strand, within SO0805 at 817.167 kb on + strand, within SO0805 at 817.167 kb on + strand, within SO0805 at 817.173 kb on - strand, within SO0805 at 817.173 kb on - strand, within SO0805 at 817.175 kb on - strand, within SO0805 at 817.175 kb on - strand, within SO0805 at 817.175 kb on - strand, within SO0805 at 817.175 kb on - strand, within SO0805 at 817.178 kb on + strand, within SO0805 at 817.186 kb on - strand, within SO0805 at 817.186 kb on - strand, within SO0805 at 817.209 kb on - strand, within SO0805 at 817.284 kb on - strand, within SO0805 at 817.291 kb on - strand, within SO0805 at 817.366 kb on + strand, within SO0805 at 817.401 kb on - strand, within SO0805 at 817.427 kb on + strand, within SO0805 at 817.490 kb on - strand, within SO0805 at 817.493 kb on + strand, within SO0805 at 817.493 kb on + strand, within SO0805 at 817.501 kb on - strand at 817.529 kb on + strand at 817.537 kb on - strand at 817.679 kb on + strand at 817.679 kb on + strand at 817.679 kb on + strand at 817.679 kb on + strand at 817.687 kb on - strand at 817.694 kb on - strand at 817.703 kb on - strand at 817.708 kb on - strand at 817.784 kb on - strand at 817.825 kb on - strand at 817.832 kb on + strand at 817.832 kb on + strand at 817.882 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cholin acetate 20 mM remove 815,369 + SO0802 0.50 -0.7 815,377 - SO0802 0.50 -0.2 815,384 + SO0802 0.51 -0.9 815,444 - SO0802 0.55 +0.3 815,486 + SO0802 0.58 +0.2 815,498 + SO0802 0.59 +0.1 815,498 + SO0802 0.59 -0.1 815,506 - SO0802 0.60 +0.0 815,506 - SO0802 0.60 +0.7 815,506 - SO0802 0.60 -0.2 815,506 - SO0802 0.60 +1.0 815,508 + SO0802 0.60 -0.1 815,508 + SO0802 0.60 +0.7 815,508 + SO0802 0.60 +0.0 815,508 + SO0802 0.60 +2.6 815,579 + SO0802 0.65 -0.5 815,619 - SO0802 0.68 -0.2 815,717 - SO0802 0.75 -0.0 815,749 - SO0802 0.78 +0.2 815,865 - SO0802 0.86 +0.0 815,881 + SO0802 0.87 -0.2 815,923 - +0.0 815,931 - -0.4 816,410 - SO0804 0.10 -0.5 816,479 + SO0804 0.22 -0.5 816,490 + SO0804 0.24 -0.5 816,601 - SO0804 0.42 -0.0 816,643 - SO0804 0.49 -0.9 816,685 - SO0804 0.56 -0.4 816,694 - SO0804 0.57 -0.1 816,814 + SO0804 0.77 -1.2 816,893 + -0.3 816,893 + +0.2 816,893 + -0.3 816,893 + -0.3 816,901 - +0.2 816,901 - +0.9 816,901 - -0.8 816,901 - -0.1 816,901 - -0.3 816,901 - -0.0 816,901 - +0.4 816,986 + +0.4 816,986 + +0.1 816,994 - -0.1 817,022 + +0.8 817,029 + -0.3 817,030 - -0.5 817,054 + +0.2 817,062 - +1.9 817,090 - SO0805 0.11 -0.3 817,165 + SO0805 0.26 +1.1 817,167 + SO0805 0.26 +0.9 817,167 + SO0805 0.26 +2.1 817,173 - SO0805 0.27 -0.1 817,173 - SO0805 0.27 +0.3 817,175 - SO0805 0.28 +0.6 817,175 - SO0805 0.28 -0.7 817,175 - SO0805 0.28 -0.2 817,175 - SO0805 0.28 -0.3 817,178 + SO0805 0.28 +0.2 817,186 - SO0805 0.30 +0.1 817,186 - SO0805 0.30 -0.2 817,209 - SO0805 0.34 -1.7 817,284 - SO0805 0.49 +0.4 817,291 - SO0805 0.50 +0.4 817,366 + SO0805 0.64 +0.8 817,401 - SO0805 0.71 -0.4 817,427 + SO0805 0.76 -0.3 817,490 - SO0805 0.88 -0.1 817,493 + SO0805 0.89 +0.7 817,493 + SO0805 0.89 +1.2 817,501 - -0.0 817,529 + +0.3 817,537 - +0.2 817,679 + +0.6 817,679 + -0.8 817,679 + -1.1 817,679 + +0.4 817,687 - -0.2 817,694 - -0.6 817,703 - -0.1 817,708 - -0.3 817,784 - +0.2 817,825 - -0.6 817,832 + +0.2 817,832 + +1.0 817,882 - +0.1
Or see this region's nucleotide sequence