Experiment: Cholin acetate 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0588 and SO_0589 are separated by 68 nucleotides SO_0589 and SO0588.2 are separated by 40 nucleotides SO0588.2 and SO_0590 are separated by 17 nucleotides
SO0588: SO0588 - transporter, putative (NCBI ptt file), at 613,120 to 616,323
SO0588
SO_0589: SO_0589 - no description, at 616,392 to 616,799
_0589
SO0588.2: SO0588.2 - hypothetical permease of the drug/metabolite transporter (DMT) superfamily (NCBI ptt file), at 616,840 to 617,277
SO0588.2
SO_0590: SO_0590 - no description, at 617,295 to 618,032
_0590
Position (kb) 616
617 Strain fitness (log2 ratio) -1
0
1
2 at 615.397 kb on - strand, within SO0588 at 615.443 kb on + strand, within SO0588 at 615.483 kb on + strand, within SO0588 at 615.520 kb on - strand, within SO0588 at 615.557 kb on - strand, within SO0588 at 615.606 kb on + strand, within SO0588 at 615.701 kb on - strand, within SO0588 at 615.737 kb on - strand, within SO0588 at 615.747 kb on - strand, within SO0588 at 615.798 kb on + strand, within SO0588 at 615.939 kb on + strand, within SO0588 at 616.063 kb on + strand at 616.087 kb on - strand at 616.134 kb on + strand at 616.239 kb on - strand at 616.358 kb on + strand at 616.435 kb on + strand, within SO_0589 at 616.435 kb on + strand, within SO_0589 at 616.472 kb on + strand, within SO_0589 at 616.533 kb on - strand, within SO_0589 at 616.586 kb on + strand, within SO_0589 at 616.615 kb on + strand, within SO_0589 at 616.641 kb on + strand, within SO_0589 at 616.648 kb on - strand, within SO_0589 at 616.681 kb on + strand, within SO_0589 at 616.813 kb on - strand at 616.824 kb on + strand at 616.824 kb on + strand at 616.824 kb on + strand at 616.824 kb on + strand at 616.832 kb on - strand at 616.832 kb on - strand at 616.832 kb on - strand at 616.832 kb on - strand at 616.832 kb on - strand at 616.837 kb on - strand at 616.869 kb on + strand at 616.869 kb on + strand at 616.995 kb on + strand, within SO0588.2 at 617.013 kb on - strand, within SO0588.2 at 617.042 kb on + strand, within SO0588.2 at 617.052 kb on + strand, within SO0588.2 at 617.052 kb on + strand, within SO0588.2 at 617.133 kb on + strand, within SO0588.2 at 617.148 kb on + strand, within SO0588.2 at 617.161 kb on - strand, within SO0588.2 at 617.208 kb on - strand, within SO0588.2 at 617.229 kb on - strand, within SO0588.2
Per-strain Table
Position Strand Gene LocusTag Fraction Cholin acetate 20 mM remove 615,397 - SO0588 0.71 +0.5 615,443 + SO0588 0.73 -0.0 615,483 + SO0588 0.74 +0.1 615,520 - SO0588 0.75 +0.7 615,557 - SO0588 0.76 +0.5 615,606 + SO0588 0.78 -0.8 615,701 - SO0588 0.81 +0.7 615,737 - SO0588 0.82 +0.6 615,747 - SO0588 0.82 -0.5 615,798 + SO0588 0.84 -0.0 615,939 + SO0588 0.88 +0.1 616,063 + +0.2 616,087 - +1.1 616,134 + -1.0 616,239 - -0.2 616,358 + -0.3 616,435 + SO_0589 0.11 +0.0 616,435 + SO_0589 0.11 -0.2 616,472 + SO_0589 0.20 +0.5 616,533 - SO_0589 0.35 +0.6 616,586 + SO_0589 0.48 -0.4 616,615 + SO_0589 0.55 +0.4 616,641 + SO_0589 0.61 +1.7 616,648 - SO_0589 0.63 +0.3 616,681 + SO_0589 0.71 +1.2 616,813 - -0.0 616,824 + -0.6 616,824 + +0.4 616,824 + -0.2 616,824 + +0.9 616,832 - +0.8 616,832 - -0.2 616,832 - +0.9 616,832 - -0.4 616,832 - -0.0 616,837 - -0.6 616,869 + -1.6 616,869 + +0.5 616,995 + SO0588.2 0.35 -0.3 617,013 - SO0588.2 0.39 -0.0 617,042 + SO0588.2 0.46 +0.0 617,052 + SO0588.2 0.48 +0.4 617,052 + SO0588.2 0.48 -0.8 617,133 + SO0588.2 0.67 -0.6 617,148 + SO0588.2 0.70 -0.4 617,161 - SO0588.2 0.73 -0.2 617,208 - SO0588.2 0.84 -0.2 617,229 - SO0588.2 0.89 +2.2
Or see this region's nucleotide sequence