Strain Fitness in Shewanella oneidensis MR-1 around SO4391

Experiment: Choline chloride 150 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Choline chloride 150 mM
4,587,265	+				+0.4
4,587,272	+				+2.2
4,587,298	-				+1.4
4,587,304	+				+0.6
4,587,305	-				-1.0
4,587,313	+				-0.3
4,587,313	+				+0.3
4,587,313	+				-0.1
4,587,313	+				-0.9
4,587,321	-				+0.6
4,587,321	-				+0.3
4,587,321	-				-0.1
4,587,321	-				+0.3
4,587,413	-				-1.0
4,587,464	+				+0.6
4,587,464	+				-0.5
4,587,464	+				-0.2
4,587,464	+				+0.4
4,587,472	+				-0.0
4,587,472	-				+0.0
4,587,472	-				-0.1
4,587,472	-				-0.1
4,587,472	-				+1.6
4,587,472	-				-0.3
4,587,472	-				-0.5
4,587,472	-				-0.1
4,587,473	-				-0.6
4,587,528	+				+0.8
4,587,536	-				-0.6
4,587,541	+				-0.5
4,587,546	+				-0.2
4,587,546	+				+1.2
4,587,546	+				+0.0
4,587,546	+				-1.2
4,587,554	-				-0.1
4,587,554	-				-0.3
4,587,554	-				-0.2
4,587,554	-				+1.2
4,587,554	-				+0.3
4,587,559	+				-0.1
4,587,565	+				-0.7
4,587,576	-				+0.2
4,587,578	-				-0.2
4,587,578	-				+2.2
4,587,578	-				+1.1
4,587,578	-				-0.7
4,587,578	-				-0.4
4,587,578	-				+0.3
4,587,583	-				+0.2
4,587,583	-				+0.4
4,587,583	-				+0.2
4,587,583	-				-0.5
4,587,583	-				-0.1
4,587,583	-				-1.3
4,587,583	-				-0.1
4,587,583	-				-0.2
4,587,583	-				+1.3
4,587,649	-				+1.1
4,587,696	+				+1.6
4,587,696	+				+3.2
4,587,853	+		SO4391	0.24	+0.0
4,587,859	-		SO4391	0.25	+0.2
4,587,877	+		SO4391	0.28	+0.1
4,587,877	+		SO4391	0.28	-0.1
4,587,877	+		SO4391	0.28	+0.1
4,587,923	-		SO4391	0.34	+0.2
4,587,930	-		SO4391	0.35	-0.2
4,587,930	-		SO4391	0.35	-0.4
4,587,931	-		SO4391	0.35	+0.4
4,587,957	+		SO4391	0.39	+0.5
4,587,958	+		SO4391	0.39	+1.8
4,587,958	+		SO4391	0.39	-1.7
4,587,958	+		SO4391	0.39	-0.7
4,587,996	-		SO4391	0.44	+0.9
4,588,022	+		SO4391	0.47	+0.2
4,588,022	+		SO4391	0.47	+0.3
4,588,022	+		SO4391	0.47	+0.2
4,588,022	+		SO4391	0.47	-0.7
4,588,022	+		SO4391	0.47	+0.1
4,588,022	+		SO4391	0.47	-0.3
4,588,022	+		SO4391	0.47	+0.1
4,588,022	+		SO4391	0.47	-0.1
4,588,022	+		SO4391	0.47	-0.0
4,588,037	+		SO4391	0.49	+0.1
4,588,038	+		SO4391	0.50	-0.1
4,588,038	+		SO4391	0.50	+0.3
4,588,040	+		SO4391	0.50	-0.4
4,588,043	+		SO4391	0.50	-0.8
4,588,045	-		SO4391	0.50	-0.5
4,588,046	-		SO4391	0.51	+0.4
4,588,046	-		SO4391	0.51	+0.1
4,588,048	+		SO4391	0.51	+0.6
4,588,048	+		SO4391	0.51	+0.2
4,588,048	+		SO4391	0.51	-0.0
4,588,056	-		SO4391	0.52	-0.3
4,588,056	-		SO4391	0.52	-0.5
4,588,056	-		SO4391	0.52	-0.8
4,588,066	-		SO4391	0.53	+0.3
4,588,068	-		SO4391	0.54	-0.5
4,588,069	-		SO4391	0.54	-0.1
4,588,069	-		SO4391	0.54	+0.0
4,588,069	-		SO4391	0.54	+1.2
4,588,069	-		SO4391	0.54	-0.4
4,588,069	-		SO4391	0.54	+0.3
4,588,121	+		SO4391	0.61	+0.3
4,588,121	+		SO4391	0.61	+0.3
4,588,128	+		SO4391	0.62	+0.2
4,588,129	-		SO4391	0.62	+0.5
4,588,169	-		SO4391	0.67	+0.3
4,588,194	-		SO4391	0.71	+0.2
4,588,195	-		SO4391	0.71	+0.3
4,588,300	+		SO4391	0.85	-0.5
4,588,300	+		SO4391	0.85	-0.6
4,588,300	+		SO4391	0.85	-1.1
4,588,310	+		SO4391	0.87	-0.1
4,588,310	+		SO4391	0.87	+0.3
4,588,310	+		SO4391	0.87	-0.3
4,588,310	+		SO4391	0.87	-0.1
4,588,310	+		SO4391	0.87	-0.2
4,588,310	+		SO4391	0.87	-1.1
4,588,310	+		SO4391	0.87	+0.1
4,588,310	+		SO4391	0.87	+0.8
4,588,310	+		SO4391	0.87	+0.1
4,588,310	+		SO4391	0.87	+0.4
4,588,310	+		SO4391	0.87	+0.3
4,588,310	+		SO4391	0.87	-0.3
4,588,310	+		SO4391	0.87	+1.0
4,588,310	+		SO4391	0.87	-0.9
4,588,318	-		SO4391	0.88	-0.9
4,588,330	+		SO4391	0.89	+1.3
4,588,330	+		SO4391	0.89	-0.3
4,588,330	+		SO4391	0.89	+0.5
4,588,330	+		SO4391	0.89	-0.3
4,588,330	+		SO4391	0.89	-0.1
4,588,330	+		SO4391	0.89	-1.0
4,588,330	+		SO4391	0.89	-0.1
4,588,330	+		SO4391	0.89	+0.3
4,588,330	+		SO4391	0.89	+0.0
4,588,330	+		SO4391	0.89	+0.1
4,588,330	+		SO4391	0.89	+0.3
4,588,330	+		SO4391	0.89	-0.9
4,588,330	+		SO4391	0.89	+0.1
4,588,330	+		SO4391	0.89	-0.3
4,588,330	+		SO4391	0.89	-0.7
4,588,330	+		SO4391	0.89	-1.9
4,588,330	+		SO4391	0.89	-0.9
4,588,338	-				-0.3
4,588,338	-				+0.6
4,588,338	-				-0.4
4,588,338	-				-0.2
4,588,338	-				+0.1
4,588,338	-				+0.1
4,588,338	-				-0.1
4,588,342	+				-0.0
4,588,342	+				+0.1
4,588,342	+				+0.1
4,588,364	-				+0.4
4,588,364	-				+0.3
4,588,382	+				-1.1
4,588,382	+				+0.4
4,588,382	+				+0.1
4,588,382	+				-0.4
4,588,382	+				+0.3
4,588,431	-				+0.4
4,588,432	+				+1.3
4,588,432	+				+0.7
4,588,467	+				-0.1
4,588,467	+				+1.2
4,588,467	+				-0.8
4,588,467	+				-0.5
4,588,467	+				+0.7
4,588,467	+				+0.3
4,588,467	+				-0.9
4,588,467	+				-0.3
4,588,467	+				-0.8
4,588,467	+				+0.2
4,588,467	+				+0.0
4,588,467	+				-0.8
4,588,467	+				-1.3
4,588,473	+				+0.1
4,588,473	+				+0.2
4,588,475	-				+0.5
4,588,475	-				-0.5
4,588,475	-				+1.9
4,588,475	-				-0.5
4,588,475	-				-0.5
4,588,475	-				+0.9
4,588,475	-				+0.3
4,588,475	-				+0.1
4,588,475	-				-0.3
4,588,475	-				+0.6
4,588,475	-				+1.6
4,588,475	-				-1.9
4,588,475	-				+0.2
4,588,475	-				-2.1
4,588,475	-				-0.0
4,588,475	-				-0.8
4,588,475	-				+0.5
4,588,475	-				-0.7
4,588,476	-				+0.0
4,588,480	+				-0.6
4,588,480	+				-0.7
4,588,480	+				-0.0
4,588,480	+				+0.1
4,588,480	+				-0.1
4,588,480	+				-0.4
4,588,480	+				-0.2
4,588,481	+				-0.0
4,588,481	-				+1.1
4,588,488	-				-0.0
4,588,488	-				+0.3
4,588,488	-				-0.8
4,588,488	-				-1.3
4,588,488	-				-0.2
4,588,488	-				-0.3
4,588,488	-				-0.2
4,588,488	-				-0.3
4,588,488	-				-0.0
4,588,488	-				-0.1
4,588,488	-				+0.6
4,588,488	-				+0.8
4,588,488	-				+0.6
4,588,488	-				-0.8
4,588,488	-				+0.4
4,588,488	-				-0.3
4,588,494	-				+0.0
4,588,515	+				+0.6
4,588,515	+				-0.9
4,588,515	+				+0.1
4,588,515	+				+0.6
4,588,515	+				-1.6
4,588,519	+				-0.7
4,588,523	-				+0.9
4,588,523	-				-0.5
4,588,523	-				+0.0
4,588,523	-				+2.0
4,588,524	+				-0.5
4,588,529	-				-2.7
4,588,535	+				-1.0
4,588,535	+				-0.2
4,588,535	+				+0.1
4,588,535	+				-0.0
4,588,535	+				+0.4
4,588,536	+				+0.3
4,588,536	+				-1.0
4,588,543	-				+0.0
4,588,543	-				-0.4
4,588,543	-				+0.4
4,588,543	-				+0.3
4,588,543	-				-0.6
4,588,543	-				-1.0
4,588,543	-				+0.6
4,588,543	-				-0.4
4,588,543	-				-0.2
4,588,544	-				+0.2
4,588,560	-				-0.2
4,588,575	-				-0.5
4,588,602	+				-0.3
4,588,602	+				+0.4
4,588,602	+				-1.2
4,588,602	+				-0.3
4,588,602	+				-0.5
4,588,629	-				-0.3
4,588,636	-				-0.0
4,588,636	-				+0.2
4,588,882	-				-0.5
4,588,965	+				+0.1
4,588,970	+				-0.1
4,589,028	-				-0.2
4,589,180	+		SO4393	0.23	-0.0
4,589,188	-		SO4393	0.24	+0.9
4,589,203	-		SO4393	0.28	-0.5
4,589,235	-		SO4393	0.35	+1.1