Strain Fitness in Shewanella oneidensis MR-1 around SO3648

Experiment: Choline chloride 150 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfolA and SO3647 are separated by 22 nucleotidesSO3647 and SO3648 overlap by 4 nucleotidesSO3648 and SO3649 are separated by 27 nucleotides SO3646: folA - dihydrofolate reductase (NCBI ptt file), at 3,803,928 to 3,804,410 folA SO3647: SO3647 - conserved hypothetical protein (NCBI ptt file), at 3,804,433 to 3,804,906 SO3647 SO3648: SO3648 - conserved hypothetical protein (NCBI ptt file), at 3,804,903 to 3,805,664 SO3648 SO3649: SO3649 - GTP-binding protein, GTP1/Obg family (NCBI ptt file), at 3,805,692 to 3,806,858 SO3649 Position (kb) 3804 3805 3806Strain fitness (log2 ratio) -1 0 1at 3804.968 kb on - strandat 3805.191 kb on - strand, within SO3648at 3805.295 kb on - strand, within SO3648at 3805.547 kb on - strand, within SO3648

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Per-strain Table

Position Strand Gene LocusTag Fraction Choline chloride 150 mM
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3,804,968 - -0.2
3,805,191 - SO3648 0.38 -1.2
3,805,295 - SO3648 0.51 -0.9
3,805,547 - SO3648 0.85 +0.3

Or see this region's nucleotide sequence