Strain Fitness in Shewanella oneidensis MR-1 around SO0194

Experiment: Choline chloride 150 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO0192 and SO0193 are separated by 235 nucleotidesSO0193 and SO0194 overlap by 10 nucleotidesSO0194 and ybbB are separated by 77 nucleotides SO0192: SO0192 - acetyltransferase, GNAT family (NCBI ptt file), at 201,735 to 202,178 SO0192 SO0193: SO0193 - transcriptional regulator, TetR family (NCBI ptt file), at 202,414 to 203,025 SO0193 SO0194: SO0194 - acyltransferase family protein (NCBI ptt file), at 203,016 to 204,878 SO0194 SO0195: ybbB - ybbB protein (NCBI ptt file), at 204,956 to 206,086 ybbB Position (kb) 203 204 205Strain fitness (log2 ratio) -2 -1 0 1 2at 202.020 kb on - strand, within SO0192at 202.034 kb on + strand, within SO0192at 202.034 kb on + strand, within SO0192at 202.034 kb on + strand, within SO0192at 202.034 kb on + strand, within SO0192at 202.042 kb on - strand, within SO0192at 202.042 kb on - strand, within SO0192at 202.042 kb on - strand, within SO0192at 202.115 kb on + strand, within SO0192at 202.191 kb on - strandat 202.273 kb on + strandat 202.288 kb on - strandat 202.295 kb on - strandat 202.323 kb on - strandat 202.411 kb on - strandat 202.417 kb on - strandat 202.429 kb on + strandat 202.505 kb on + strand, within SO0193at 202.565 kb on - strand, within SO0193at 202.617 kb on - strand, within SO0193at 202.716 kb on - strand, within SO0193at 202.721 kb on + strand, within SO0193at 202.721 kb on + strand, within SO0193at 202.729 kb on - strand, within SO0193at 202.729 kb on - strand, within SO0193at 202.744 kb on + strand, within SO0193at 202.754 kb on + strand, within SO0193at 202.788 kb on - strand, within SO0193at 202.828 kb on - strand, within SO0193at 202.830 kb on + strand, within SO0193at 202.878 kb on + strand, within SO0193at 202.878 kb on + strand, within SO0193at 202.952 kb on - strand, within SO0193at 203.084 kb on - strandat 203.113 kb on + strandat 203.121 kb on - strandat 203.121 kb on - strandat 203.132 kb on + strandat 203.140 kb on - strandat 203.143 kb on - strandat 203.288 kb on - strand, within SO0194at 203.342 kb on + strand, within SO0194at 203.368 kb on + strand, within SO0194at 203.372 kb on - strand, within SO0194at 203.376 kb on - strand, within SO0194at 203.395 kb on + strand, within SO0194at 203.404 kb on + strand, within SO0194at 203.412 kb on + strand, within SO0194at 203.501 kb on - strand, within SO0194at 203.607 kb on + strand, within SO0194at 203.615 kb on - strand, within SO0194at 203.615 kb on - strand, within SO0194at 203.855 kb on + strand, within SO0194at 203.882 kb on + strand, within SO0194at 203.892 kb on - strand, within SO0194at 203.892 kb on - strand, within SO0194at 203.919 kb on + strand, within SO0194at 203.927 kb on - strand, within SO0194at 203.932 kb on - strand, within SO0194at 204.063 kb on + strand, within SO0194at 204.075 kb on + strand, within SO0194at 204.097 kb on + strand, within SO0194at 204.103 kb on - strand, within SO0194at 204.143 kb on + strand, within SO0194at 204.143 kb on + strand, within SO0194at 204.187 kb on - strand, within SO0194at 204.315 kb on - strand, within SO0194at 204.349 kb on - strand, within SO0194at 204.410 kb on - strand, within SO0194at 204.522 kb on + strand, within SO0194at 204.575 kb on - strand, within SO0194at 204.586 kb on - strand, within SO0194at 204.741 kb on - strandat 204.778 kb on + strandat 204.812 kb on - strandat 204.828 kb on + strandat 204.838 kb on + strandat 204.846 kb on - strandat 204.858 kb on + strandat 204.938 kb on + strandat 204.943 kb on + strandat 204.946 kb on - strandat 204.953 kb on - strandat 204.978 kb on + strandat 205.015 kb on - strandat 205.113 kb on - strand, within ybbBat 205.153 kb on - strand, within ybbBat 205.229 kb on - strand, within ybbBat 205.344 kb on - strand, within ybbBat 205.416 kb on - strand, within ybbBat 205.416 kb on - strand, within ybbBat 205.438 kb on - strand, within ybbBat 205.483 kb on - strand, within ybbBat 205.566 kb on + strand, within ybbBat 205.598 kb on - strand, within ybbBat 205.632 kb on + strand, within ybbBat 205.650 kb on - strand, within ybbBat 205.728 kb on - strand, within ybbBat 205.786 kb on + strand, within ybbBat 205.809 kb on - strand, within ybbBat 205.809 kb on - strand, within ybbB

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Per-strain Table

Position Strand Gene LocusTag Fraction Choline chloride 150 mM
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202,020 - SO0192 0.64 -0.5
202,034 + SO0192 0.67 -0.4
202,034 + SO0192 0.67 -0.2
202,034 + SO0192 0.67 -0.3
202,034 + SO0192 0.67 +0.7
202,042 - SO0192 0.69 -0.1
202,042 - SO0192 0.69 +0.0
202,042 - SO0192 0.69 +0.0
202,115 + SO0192 0.86 -0.3
202,191 - +0.7
202,273 + +0.3
202,288 - +0.4
202,295 - -0.4
202,323 - -0.1
202,411 - +1.9
202,417 - +0.9
202,429 + +0.5
202,505 + SO0193 0.15 +0.4
202,565 - SO0193 0.25 +0.9
202,617 - SO0193 0.33 +0.4
202,716 - SO0193 0.49 +0.6
202,721 + SO0193 0.50 +0.6
202,721 + SO0193 0.50 +0.1
202,729 - SO0193 0.51 +1.7
202,729 - SO0193 0.51 +0.8
202,744 + SO0193 0.54 -1.8
202,754 + SO0193 0.56 -0.3
202,788 - SO0193 0.61 +1.1
202,828 - SO0193 0.68 +1.0
202,830 + SO0193 0.68 +0.2
202,878 + SO0193 0.76 -0.1
202,878 + SO0193 0.76 +0.0
202,952 - SO0193 0.88 +1.2
203,084 - +0.6
203,113 + +0.9
203,121 - +1.1
203,121 - +1.0
203,132 + +1.5
203,140 - +0.6
203,143 - +0.7
203,288 - SO0194 0.15 +0.7
203,342 + SO0194 0.17 +0.9
203,368 + SO0194 0.19 +1.0
203,372 - SO0194 0.19 +0.7
203,376 - SO0194 0.19 +1.9
203,395 + SO0194 0.20 +0.6
203,404 + SO0194 0.21 +1.7
203,412 + SO0194 0.21 +1.0
203,501 - SO0194 0.26 +1.3
203,607 + SO0194 0.32 +1.0
203,615 - SO0194 0.32 +0.5
203,615 - SO0194 0.32 -0.5
203,855 + SO0194 0.45 +0.6
203,882 + SO0194 0.46 +1.2
203,892 - SO0194 0.47 +1.3
203,892 - SO0194 0.47 +1.2
203,919 + SO0194 0.48 +1.0
203,927 - SO0194 0.49 +0.2
203,932 - SO0194 0.49 +0.2
204,063 + SO0194 0.56 +0.9
204,075 + SO0194 0.57 +0.2
204,097 + SO0194 0.58 +1.0
204,103 - SO0194 0.58 +0.7
204,143 + SO0194 0.60 +1.3
204,143 + SO0194 0.60 +0.4
204,187 - SO0194 0.63 +1.3
204,315 - SO0194 0.70 +0.8
204,349 - SO0194 0.72 +0.8
204,410 - SO0194 0.75 +1.1
204,522 + SO0194 0.81 +0.7
204,575 - SO0194 0.84 +1.1
204,586 - SO0194 0.84 +1.4
204,741 - +0.7
204,778 + +1.5
204,812 - +0.8
204,828 + +0.8
204,838 + +1.2
204,846 - +1.5
204,858 + +1.4
204,938 + -0.6
204,943 + -0.1
204,946 - +0.5
204,953 - +0.1
204,978 + +0.1
205,015 - -0.4
205,113 - ybbB SO0195 0.14 -0.2
205,153 - ybbB SO0195 0.17 -0.2
205,229 - ybbB SO0195 0.24 +0.1
205,344 - ybbB SO0195 0.34 +0.2
205,416 - ybbB SO0195 0.41 +0.6
205,416 - ybbB SO0195 0.41 -1.3
205,438 - ybbB SO0195 0.43 +0.2
205,483 - ybbB SO0195 0.47 +0.4
205,566 + ybbB SO0195 0.54 -0.3
205,598 - ybbB SO0195 0.57 -0.7
205,632 + ybbB SO0195 0.60 -0.2
205,650 - ybbB SO0195 0.61 -0.6
205,728 - ybbB SO0195 0.68 +0.7
205,786 + ybbB SO0195 0.73 -0.1
205,809 - ybbB SO0195 0.75 -0.8
205,809 - ybbB SO0195 0.75 -0.3

Or see this region's nucleotide sequence