Experiment: acetate 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0034 and smg are separated by 2 nucleotides smg and SO0036 are separated by 112 nucleotides SO0036 and SO0037 are separated by 138 nucleotides SO0037 and hemF are separated by 28 nucleotides
SO0034: SO0034 - DNA processing protein DprA, putative (NCBI ptt file), at 39,244 to 40,260
SO0034
SO0035: smg - smg protein (NCBI ptt file), at 40,263 to 40,739
smg
SO0036: SO0036 - topoisomerase DNA-binding C4 zinc finger domain protein (NCBI ptt file), at 40,852 to 41,418
SO0036
SO0037: SO0037 - Sua5/YciO/YrdC/YwlC family protein (NCBI ptt file), at 41,557 to 42,123
SO0037
SO0038: hemF - coproporphyrinogen III oxidase, aerobic (NCBI ptt file), at 42,152 to 43,060
hemF
Position (kb) 40
41
42 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 39.880 kb on - strand, within SO0034 at 40.061 kb on + strand, within SO0034 at 40.227 kb on + strand at 40.234 kb on + strand at 40.234 kb on + strand at 40.239 kb on + strand at 40.239 kb on + strand at 40.246 kb on + strand at 40.247 kb on - strand at 40.252 kb on - strand at 40.335 kb on + strand, within smg at 40.344 kb on - strand, within smg at 40.350 kb on - strand, within smg at 40.362 kb on + strand, within smg at 40.430 kb on + strand, within smg at 40.430 kb on + strand, within smg at 40.435 kb on + strand, within smg at 40.435 kb on + strand, within smg at 40.435 kb on + strand, within smg at 40.435 kb on + strand, within smg at 40.435 kb on + strand, within smg at 40.436 kb on + strand, within smg at 40.436 kb on + strand, within smg at 40.436 kb on + strand, within smg at 40.438 kb on - strand, within smg at 40.443 kb on - strand, within smg at 40.443 kb on - strand, within smg at 40.443 kb on - strand, within smg at 40.443 kb on - strand, within smg at 40.443 kb on - strand, within smg at 40.443 kb on - strand, within smg at 40.443 kb on - strand, within smg at 40.443 kb on - strand, within smg at 40.443 kb on - strand, within smg at 40.445 kb on + strand, within smg at 40.511 kb on - strand, within smg at 40.564 kb on + strand, within smg at 40.660 kb on - strand, within smg at 40.727 kb on + strand at 40.735 kb on - strand at 40.750 kb on - strand at 40.878 kb on + strand at 40.978 kb on - strand, within SO0036 at 41.015 kb on - strand, within SO0036 at 41.023 kb on - strand, within SO0036 at 41.025 kb on + strand, within SO0036 at 41.057 kb on + strand, within SO0036 at 41.149 kb on - strand, within SO0036 at 41.180 kb on + strand, within SO0036 at 41.188 kb on - strand, within SO0036 at 41.216 kb on + strand, within SO0036 at 41.216 kb on + strand, within SO0036 at 41.360 kb on + strand, within SO0036 at 41.371 kb on + strand at 41.379 kb on - strand at 41.426 kb on - strand at 41.454 kb on + strand at 41.454 kb on - strand at 41.462 kb on - strand at 41.462 kb on - strand at 41.481 kb on + strand at 42.218 kb on + strand at 42.219 kb on + strand at 42.294 kb on + strand, within hemF at 42.308 kb on - strand, within hemF at 42.308 kb on - strand, within hemF at 42.398 kb on - strand, within hemF at 42.411 kb on + strand, within hemF
Per-strain Table
Position Strand Gene LocusTag Fraction acetate 50 mM remove 39,880 - SO0034 0.63 -0.1 40,061 + SO0034 0.80 +0.0 40,227 + -0.4 40,234 + +0.1 40,234 + +0.9 40,239 + -0.3 40,239 + -0.4 40,246 + -1.0 40,247 - -0.6 40,252 - -1.0 40,335 + smg SO0035 0.15 +0.2 40,344 - smg SO0035 0.17 -1.2 40,350 - smg SO0035 0.18 +1.4 40,362 + smg SO0035 0.21 -0.2 40,430 + smg SO0035 0.35 -0.5 40,430 + smg SO0035 0.35 -1.2 40,435 + smg SO0035 0.36 -0.8 40,435 + smg SO0035 0.36 -2.4 40,435 + smg SO0035 0.36 -0.8 40,435 + smg SO0035 0.36 -1.3 40,435 + smg SO0035 0.36 -0.7 40,436 + smg SO0035 0.36 -1.4 40,436 + smg SO0035 0.36 -1.4 40,436 + smg SO0035 0.36 +0.6 40,438 - smg SO0035 0.37 -0.3 40,443 - smg SO0035 0.38 -0.9 40,443 - smg SO0035 0.38 +0.4 40,443 - smg SO0035 0.38 -3.1 40,443 - smg SO0035 0.38 -1.5 40,443 - smg SO0035 0.38 -2.0 40,443 - smg SO0035 0.38 -1.2 40,443 - smg SO0035 0.38 -0.6 40,443 - smg SO0035 0.38 +0.1 40,443 - smg SO0035 0.38 -1.7 40,445 + smg SO0035 0.38 -0.5 40,511 - smg SO0035 0.52 -0.3 40,564 + smg SO0035 0.63 -0.6 40,660 - smg SO0035 0.83 -0.9 40,727 + -2.3 40,735 - -0.9 40,750 - -0.6 40,878 + +0.3 40,978 - SO0036 0.22 -0.2 41,015 - SO0036 0.29 -0.2 41,023 - SO0036 0.30 +0.0 41,025 + SO0036 0.31 +0.9 41,057 + SO0036 0.36 +0.3 41,149 - SO0036 0.52 -0.4 41,180 + SO0036 0.58 +0.1 41,188 - SO0036 0.59 +0.2 41,216 + SO0036 0.64 +0.1 41,216 + SO0036 0.64 -0.6 41,360 + SO0036 0.90 -0.1 41,371 + -0.3 41,379 - +0.5 41,426 - +0.5 41,454 + +0.3 41,454 - -1.2 41,462 - +0.6 41,462 - +0.2 41,481 + +0.5 42,218 + +1.1 42,219 + -0.8 42,294 + hemF SO0038 0.16 -0.8 42,308 - hemF SO0038 0.17 -1.1 42,308 - hemF SO0038 0.17 +0.0 42,398 - hemF SO0038 0.27 -0.6 42,411 + hemF SO0038 0.28 -0.3
Or see this region's nucleotide sequence