Experiment: Cholin acetate 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO4035 and SO4036 are separated by 141 nucleotides SO4036 and SO4037 overlap by 50 nucleotides SO4037 and SO4038 are separated by 174 nucleotides SO4038 and SO4039 are separated by 56 nucleotides
SO4035: SO4035 - hypothetical protein (NCBI ptt file), at 4,191,635 to 4,191,994
SO4035
SO4036: SO4036 - hypothetical protein (NCBI ptt file), at 4,192,136 to 4,192,666
SO4036
SO4037: SO4037 - hypothetical protein (NCBI ptt file), at 4,192,617 to 4,193,150
SO4037
SO4038: SO4038 - hypothetical protein (NCBI ptt file), at 4,193,325 to 4,193,837
SO4038
SO4039: SO4039 - hydrolase, haloacid dehalogenase-like family (NCBI ptt file), at 4,193,894 to 4,194,502
SO4039
Position (kb) 4192
4193
4194 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4191.750 kb on + strand, within SO4035 at 4191.750 kb on + strand, within SO4035 at 4191.758 kb on - strand, within SO4035 at 4191.758 kb on - strand, within SO4035 at 4191.874 kb on - strand, within SO4035 at 4191.896 kb on - strand, within SO4035 at 4191.898 kb on + strand, within SO4035 at 4191.906 kb on - strand, within SO4035 at 4191.972 kb on - strand at 4192.107 kb on + strand at 4192.109 kb on + strand at 4192.318 kb on + strand, within SO4036 at 4192.430 kb on - strand, within SO4036 at 4192.493 kb on + strand, within SO4036 at 4192.548 kb on + strand, within SO4036 at 4192.661 kb on + strand at 4192.669 kb on + strand at 4192.720 kb on + strand, within SO4037 at 4192.728 kb on - strand, within SO4037 at 4192.747 kb on + strand, within SO4037 at 4192.747 kb on + strand, within SO4037 at 4192.747 kb on + strand, within SO4037 at 4192.749 kb on + strand, within SO4037 at 4192.755 kb on - strand, within SO4037 at 4192.755 kb on - strand, within SO4037 at 4192.756 kb on - strand, within SO4037 at 4192.756 kb on - strand, within SO4037 at 4192.780 kb on - strand, within SO4037 at 4192.893 kb on + strand, within SO4037 at 4192.893 kb on + strand, within SO4037 at 4192.901 kb on - strand, within SO4037 at 4192.908 kb on + strand, within SO4037 at 4193.034 kb on + strand, within SO4037 at 4193.174 kb on - strand at 4193.424 kb on + strand, within SO4038 at 4193.507 kb on + strand, within SO4038 at 4193.575 kb on + strand, within SO4038 at 4193.580 kb on + strand, within SO4038 at 4193.631 kb on - strand, within SO4038 at 4193.697 kb on + strand, within SO4038 at 4193.709 kb on - strand, within SO4038 at 4193.736 kb on + strand, within SO4038 at 4193.744 kb on - strand, within SO4038 at 4193.763 kb on - strand, within SO4038 at 4193.953 kb on + strand at 4194.091 kb on - strand, within SO4039 at 4194.136 kb on + strand, within SO4039 at 4194.136 kb on + strand, within SO4039 at 4194.136 kb on + strand, within SO4039 at 4194.136 kb on + strand, within SO4039 at 4194.136 kb on + strand, within SO4039 at 4194.144 kb on - strand, within SO4039 at 4194.144 kb on - strand, within SO4039 at 4194.144 kb on - strand, within SO4039 at 4194.144 kb on - strand, within SO4039 at 4194.144 kb on - strand, within SO4039
Per-strain Table
Position Strand Gene LocusTag Fraction Cholin acetate 20 mM remove 4,191,750 + SO4035 0.32 -0.4 4,191,750 + SO4035 0.32 -0.1 4,191,758 - SO4035 0.34 +0.2 4,191,758 - SO4035 0.34 -0.5 4,191,874 - SO4035 0.66 +0.0 4,191,896 - SO4035 0.72 -0.1 4,191,898 + SO4035 0.73 -0.4 4,191,906 - SO4035 0.75 -0.2 4,191,972 - +0.1 4,192,107 + -0.1 4,192,109 + +0.8 4,192,318 + SO4036 0.34 -1.8 4,192,430 - SO4036 0.55 -0.4 4,192,493 + SO4036 0.67 +0.4 4,192,548 + SO4036 0.78 -0.1 4,192,661 + +0.4 4,192,669 + +1.1 4,192,720 + SO4037 0.19 +0.9 4,192,728 - SO4037 0.21 +0.3 4,192,747 + SO4037 0.24 -0.0 4,192,747 + SO4037 0.24 +1.5 4,192,747 + SO4037 0.24 +0.0 4,192,749 + SO4037 0.25 +0.4 4,192,755 - SO4037 0.26 +0.5 4,192,755 - SO4037 0.26 +0.4 4,192,756 - SO4037 0.26 -0.6 4,192,756 - SO4037 0.26 +0.7 4,192,780 - SO4037 0.31 +0.2 4,192,893 + SO4037 0.52 +0.1 4,192,893 + SO4037 0.52 +0.7 4,192,901 - SO4037 0.53 -0.0 4,192,908 + SO4037 0.54 +1.0 4,193,034 + SO4037 0.78 +0.1 4,193,174 - -0.3 4,193,424 + SO4038 0.19 +1.8 4,193,507 + SO4038 0.35 +0.3 4,193,575 + SO4038 0.49 -0.4 4,193,580 + SO4038 0.50 +0.1 4,193,631 - SO4038 0.60 -0.3 4,193,697 + SO4038 0.73 +0.6 4,193,709 - SO4038 0.75 -1.5 4,193,736 + SO4038 0.80 -0.4 4,193,744 - SO4038 0.82 -0.4 4,193,763 - SO4038 0.85 +0.7 4,193,953 + +0.2 4,194,091 - SO4039 0.32 +0.4 4,194,136 + SO4039 0.40 +0.1 4,194,136 + SO4039 0.40 -0.2 4,194,136 + SO4039 0.40 +0.3 4,194,136 + SO4039 0.40 +0.1 4,194,136 + SO4039 0.40 -0.1 4,194,144 - SO4039 0.41 -0.9 4,194,144 - SO4039 0.41 +0.3 4,194,144 - SO4039 0.41 +0.7 4,194,144 - SO4039 0.41 +0.5 4,194,144 - SO4039 0.41 -0.4
Or see this region's nucleotide sequence