Experiment: Cholin acetate 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0925 and SO0926 are separated by 81 nucleotides SO0926 and SO0927 are separated by 187 nucleotides SO0927 and SO0928 are separated by 374 nucleotides
SO0925: SO0925 - GGDEF domain protein (NCBI ptt file), at 954,005 to 955,012
SO0925
SO0926: SO0926 - acetyltransferase, GNAT family (NCBI ptt file), at 955,094 to 955,708
SO0926
SO0927: SO0927 - hypothetical protein (NCBI ptt file), at 955,896 to 956,237
SO0927
SO0928: SO0928 - GGDEF domain protein (NCBI ptt file), at 956,612 to 957,565
SO0928
Position (kb) 955
956 Strain fitness (log2 ratio) -1
0
1 at 954.124 kb on + strand, within SO0925 at 954.269 kb on + strand, within SO0925 at 954.277 kb on + strand, within SO0925 at 954.277 kb on + strand, within SO0925 at 954.277 kb on - strand, within SO0925 at 954.318 kb on + strand, within SO0925 at 954.367 kb on + strand, within SO0925 at 954.367 kb on + strand, within SO0925 at 954.369 kb on + strand, within SO0925 at 954.375 kb on - strand, within SO0925 at 954.375 kb on - strand, within SO0925 at 954.385 kb on - strand, within SO0925 at 954.451 kb on + strand, within SO0925 at 954.459 kb on - strand, within SO0925 at 954.459 kb on - strand, within SO0925 at 954.527 kb on - strand, within SO0925 at 954.544 kb on + strand, within SO0925 at 954.579 kb on + strand, within SO0925 at 954.579 kb on + strand, within SO0925 at 954.586 kb on + strand, within SO0925 at 954.588 kb on - strand, within SO0925 at 954.607 kb on - strand, within SO0925 at 954.686 kb on + strand, within SO0925 at 954.686 kb on + strand, within SO0925 at 954.753 kb on + strand, within SO0925 at 954.761 kb on - strand, within SO0925 at 954.769 kb on + strand, within SO0925 at 954.890 kb on + strand, within SO0925 at 954.944 kb on + strand at 954.956 kb on - strand at 954.961 kb on + strand at 954.962 kb on - strand at 954.974 kb on - strand at 954.983 kb on + strand at 954.999 kb on - strand at 955.021 kb on + strand at 955.022 kb on + strand at 955.038 kb on - strand at 955.126 kb on + strand at 955.126 kb on + strand at 955.134 kb on - strand at 955.149 kb on + strand at 955.212 kb on + strand, within SO0926 at 955.215 kb on - strand, within SO0926 at 955.220 kb on - strand, within SO0926 at 955.297 kb on - strand, within SO0926 at 955.360 kb on - strand, within SO0926 at 955.417 kb on - strand, within SO0926 at 955.424 kb on + strand, within SO0926 at 955.460 kb on + strand, within SO0926 at 955.498 kb on + strand, within SO0926 at 955.502 kb on + strand, within SO0926 at 955.563 kb on + strand, within SO0926 at 955.606 kb on + strand, within SO0926 at 955.606 kb on + strand, within SO0926 at 955.606 kb on + strand, within SO0926 at 955.606 kb on + strand, within SO0926 at 955.614 kb on - strand, within SO0926 at 955.614 kb on - strand, within SO0926 at 955.624 kb on - strand, within SO0926 at 955.624 kb on - strand, within SO0926 at 955.624 kb on - strand, within SO0926 at 955.819 kb on + strand at 955.820 kb on + strand at 955.832 kb on - strand at 955.838 kb on + strand at 955.838 kb on + strand at 955.838 kb on + strand at 955.841 kb on - strand at 955.841 kb on - strand at 955.843 kb on + strand at 955.843 kb on + strand at 955.843 kb on + strand at 955.843 kb on + strand at 955.846 kb on - strand at 955.851 kb on - strand at 955.851 kb on - strand at 955.851 kb on - strand at 955.930 kb on + strand at 956.037 kb on + strand, within SO0927 at 956.056 kb on - strand, within SO0927 at 956.089 kb on + strand, within SO0927 at 956.121 kb on - strand, within SO0927 at 956.158 kb on + strand, within SO0927 at 956.166 kb on - strand, within SO0927 at 956.177 kb on + strand, within SO0927 at 956.195 kb on - strand, within SO0927 at 956.245 kb on + strand at 956.247 kb on - strand at 956.253 kb on - strand at 956.279 kb on - strand at 956.301 kb on - strand at 956.381 kb on + strand at 956.389 kb on - strand at 956.429 kb on + strand at 956.437 kb on - strand at 956.476 kb on + strand at 956.476 kb on + strand at 956.484 kb on - strand at 956.484 kb on - strand at 956.555 kb on - strand at 956.571 kb on + strand at 956.624 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cholin acetate 20 mM remove 954,124 + SO0925 0.12 +0.2 954,269 + SO0925 0.26 +0.4 954,277 + SO0925 0.27 -0.0 954,277 + SO0925 0.27 +0.7 954,277 - SO0925 0.27 +0.2 954,318 + SO0925 0.31 +0.6 954,367 + SO0925 0.36 -0.3 954,367 + SO0925 0.36 -0.6 954,369 + SO0925 0.36 -0.1 954,375 - SO0925 0.37 +0.3 954,375 - SO0925 0.37 +0.1 954,385 - SO0925 0.38 -0.0 954,451 + SO0925 0.44 +0.1 954,459 - SO0925 0.45 +0.4 954,459 - SO0925 0.45 +0.4 954,527 - SO0925 0.52 +0.9 954,544 + SO0925 0.53 -0.4 954,579 + SO0925 0.57 +0.3 954,579 + SO0925 0.57 -0.3 954,586 + SO0925 0.58 +0.4 954,588 - SO0925 0.58 +0.5 954,607 - SO0925 0.60 -0.1 954,686 + SO0925 0.68 +0.1 954,686 + SO0925 0.68 -0.3 954,753 + SO0925 0.74 -0.1 954,761 - SO0925 0.75 +0.4 954,769 + SO0925 0.76 -1.4 954,890 + SO0925 0.88 -0.1 954,944 + +0.5 954,956 - +0.3 954,961 + -0.4 954,962 - -0.5 954,974 - +0.9 954,983 + -0.3 954,999 - +0.1 955,021 + -0.2 955,022 + -0.0 955,038 - -0.6 955,126 + +0.0 955,126 + +0.3 955,134 - +0.1 955,149 + +0.2 955,212 + SO0926 0.19 +0.4 955,215 - SO0926 0.20 -0.0 955,220 - SO0926 0.20 +0.8 955,297 - SO0926 0.33 +0.5 955,360 - SO0926 0.43 +0.3 955,417 - SO0926 0.53 +0.2 955,424 + SO0926 0.54 +0.5 955,460 + SO0926 0.60 +0.1 955,498 + SO0926 0.66 -0.3 955,502 + SO0926 0.66 +0.1 955,563 + SO0926 0.76 +0.6 955,606 + SO0926 0.83 +0.8 955,606 + SO0926 0.83 +1.0 955,606 + SO0926 0.83 +0.2 955,606 + SO0926 0.83 +0.0 955,614 - SO0926 0.85 +0.3 955,614 - SO0926 0.85 +0.6 955,624 - SO0926 0.86 +0.8 955,624 - SO0926 0.86 +0.3 955,624 - SO0926 0.86 +0.3 955,819 + +0.7 955,820 + +0.0 955,832 - +0.1 955,838 + +0.5 955,838 + +0.5 955,838 + +0.1 955,841 - +0.1 955,841 - -0.5 955,843 + +0.3 955,843 + -0.2 955,843 + +0.6 955,843 + +0.7 955,846 - +0.1 955,851 - +0.2 955,851 - -0.3 955,851 - -1.3 955,930 + -0.1 956,037 + SO0927 0.41 -0.1 956,056 - SO0927 0.47 -0.1 956,089 + SO0927 0.56 +0.3 956,121 - SO0927 0.66 -0.1 956,158 + SO0927 0.77 -0.4 956,166 - SO0927 0.79 -0.1 956,177 + SO0927 0.82 +0.0 956,195 - SO0927 0.87 +0.3 956,245 + +0.2 956,247 - +0.3 956,253 - +0.0 956,279 - +0.5 956,301 - -0.1 956,381 + -0.2 956,389 - +0.0 956,429 + -0.3 956,437 - -0.1 956,476 + +0.0 956,476 + +0.3 956,484 - -0.5 956,484 - +0.1 956,555 - -0.4 956,571 + -1.3 956,624 + +0.0
Or see this region's nucleotide sequence