Experiment: Cholin acetate 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dsbA and SO0334 are separated by 448 nucleotides SO0334 and SO0335 overlap by 4 nucleotides SO0335 and SO0336 are separated by 179 nucleotides
SO0333: dsbA - thiol:disulfide interchange protein DsbA (NCBI ptt file), at 335,685 to 336,293
dsbA
SO0334: SO0334 - conserved hypothetical protein (NCBI ptt file), at 336,742 to 336,954
SO0334
SO0335: SO0335 - conserved hypothetical protein (NCBI ptt file), at 336,951 to 337,172
SO0335
SO0336: SO0336 - hypothetical Na+/H+ antiporter (NCBI ptt file), at 337,352 to 338,875
SO0336
Position (kb) 336
337
338 Strain fitness (log2 ratio) -1
0
1 at 335.979 kb on + strand, within dsbA at 336.083 kb on + strand, within dsbA at 336.091 kb on + strand, within dsbA at 336.107 kb on - strand, within dsbA at 336.189 kb on + strand, within dsbA at 336.245 kb on + strand at 336.248 kb on - strand at 336.270 kb on + strand at 336.278 kb on - strand at 336.483 kb on + strand at 336.488 kb on + strand at 336.496 kb on - strand at 336.509 kb on - strand at 336.516 kb on - strand at 336.516 kb on - strand at 336.716 kb on - strand at 336.772 kb on - strand, within SO0334 at 336.772 kb on - strand, within SO0334 at 336.772 kb on - strand, within SO0334 at 336.813 kb on - strand, within SO0334 at 336.894 kb on + strand, within SO0334 at 336.907 kb on - strand, within SO0334 at 336.939 kb on + strand at 336.939 kb on + strand at 336.980 kb on - strand, within SO0335 at 337.068 kb on - strand, within SO0335 at 337.170 kb on + strand at 337.170 kb on + strand at 337.170 kb on + strand at 337.170 kb on + strand at 337.170 kb on + strand at 337.170 kb on + strand at 337.170 kb on + strand at 337.170 kb on + strand at 337.178 kb on - strand at 337.178 kb on - strand at 337.178 kb on - strand at 337.178 kb on - strand at 337.178 kb on - strand at 337.180 kb on + strand at 337.180 kb on + strand at 337.180 kb on + strand at 337.180 kb on + strand at 337.180 kb on + strand at 337.180 kb on + strand at 337.188 kb on - strand at 337.188 kb on - strand at 337.188 kb on - strand at 337.188 kb on - strand at 337.188 kb on - strand at 337.188 kb on - strand at 337.188 kb on - strand at 337.188 kb on - strand at 337.240 kb on - strand at 337.354 kb on - strand at 337.397 kb on + strand at 337.512 kb on - strand, within SO0336 at 337.610 kb on + strand, within SO0336 at 337.739 kb on + strand, within SO0336 at 337.769 kb on - strand, within SO0336 at 337.780 kb on - strand, within SO0336 at 337.793 kb on + strand, within SO0336 at 337.836 kb on - strand, within SO0336 at 337.837 kb on + strand, within SO0336 at 337.862 kb on - strand, within SO0336 at 337.862 kb on - strand, within SO0336 at 337.989 kb on + strand, within SO0336 at 337.997 kb on - strand, within SO0336 at 338.001 kb on + strand, within SO0336 at 338.032 kb on - strand, within SO0336 at 338.082 kb on - strand, within SO0336 at 338.092 kb on + strand, within SO0336 at 338.128 kb on + strand, within SO0336 at 338.138 kb on - strand, within SO0336 at 338.142 kb on + strand, within SO0336 at 338.147 kb on + strand, within SO0336 at 338.155 kb on - strand, within SO0336
Per-strain Table
Position Strand Gene LocusTag Fraction Cholin acetate 20 mM remove 335,979 + dsbA SO0333 0.48 +0.4 336,083 + dsbA SO0333 0.65 -0.5 336,091 + dsbA SO0333 0.67 +0.1 336,107 - dsbA SO0333 0.69 -0.2 336,189 + dsbA SO0333 0.83 -0.3 336,245 + -0.1 336,248 - -0.1 336,270 + -0.3 336,278 - +0.5 336,483 + +0.1 336,488 + +0.7 336,496 - -0.9 336,509 - +0.2 336,516 - -0.1 336,516 - +0.1 336,716 - +0.2 336,772 - SO0334 0.14 -1.3 336,772 - SO0334 0.14 +0.3 336,772 - SO0334 0.14 +0.4 336,813 - SO0334 0.33 +0.2 336,894 + SO0334 0.71 -0.5 336,907 - SO0334 0.77 -1.1 336,939 + +0.1 336,939 + -0.1 336,980 - SO0335 0.13 +0.3 337,068 - SO0335 0.53 +0.0 337,170 + +0.2 337,170 + -0.1 337,170 + -0.7 337,170 + +0.1 337,170 + -0.1 337,170 + -0.5 337,170 + +1.5 337,170 + +0.8 337,178 - +0.3 337,178 - -0.3 337,178 - +0.2 337,178 - -0.1 337,178 - -0.1 337,180 + +0.5 337,180 + -0.2 337,180 + -0.1 337,180 + +0.0 337,180 + +0.5 337,180 + +1.2 337,188 - -0.0 337,188 - -0.2 337,188 - +0.6 337,188 - +0.2 337,188 - +0.2 337,188 - +0.2 337,188 - +0.6 337,188 - +0.9 337,240 - +1.3 337,354 - -0.2 337,397 + +0.1 337,512 - SO0336 0.10 -0.4 337,610 + SO0336 0.17 -0.5 337,739 + SO0336 0.25 -0.0 337,769 - SO0336 0.27 -0.2 337,780 - SO0336 0.28 -1.1 337,793 + SO0336 0.29 +1.4 337,836 - SO0336 0.32 +0.5 337,837 + SO0336 0.32 +0.5 337,862 - SO0336 0.33 +0.6 337,862 - SO0336 0.33 +0.1 337,989 + SO0336 0.42 +0.2 337,997 - SO0336 0.42 +0.7 338,001 + SO0336 0.43 +0.8 338,032 - SO0336 0.45 -0.2 338,082 - SO0336 0.48 +0.9 338,092 + SO0336 0.49 -0.2 338,128 + SO0336 0.51 +0.0 338,138 - SO0336 0.52 +1.0 338,142 + SO0336 0.52 -0.5 338,147 + SO0336 0.52 +0.4 338,155 - SO0336 0.53 +0.4
Or see this region's nucleotide sequence