Experiment: Cholin acetate 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt trkH-2 and trkA are separated by 11 nucleotides trkA and sun are separated by 15 nucleotides
SO0028: trkH-2 - potassium uptake protein TrkH (NCBI ptt file), at 32,252 to 33,694
trkH-2
SO0029: trkA - potassium uptake protein TrkA (NCBI ptt file), at 33,706 to 35,115
trkA
SO0030: sun - sun protein (NCBI ptt file), at 35,131 to 36,417
sun
Position (kb) 33
34
35
36 Strain fitness (log2 ratio) -2
-1
0
1
2 at 32.730 kb on + strand, within trkH-2 at 32.747 kb on + strand, within trkH-2 at 32.798 kb on - strand, within trkH-2 at 32.818 kb on + strand, within trkH-2 at 32.890 kb on - strand, within trkH-2 at 32.891 kb on - strand, within trkH-2 at 32.891 kb on - strand, within trkH-2 at 32.900 kb on + strand, within trkH-2 at 32.908 kb on + strand, within trkH-2 at 32.908 kb on - strand, within trkH-2 at 32.935 kb on + strand, within trkH-2 at 32.940 kb on + strand, within trkH-2 at 32.948 kb on - strand, within trkH-2 at 32.948 kb on - strand, within trkH-2 at 32.950 kb on - strand, within trkH-2 at 32.988 kb on - strand, within trkH-2 at 33.068 kb on + strand, within trkH-2 at 33.075 kb on + strand, within trkH-2 at 33.083 kb on - strand, within trkH-2 at 33.218 kb on - strand, within trkH-2 at 33.235 kb on + strand, within trkH-2 at 33.235 kb on + strand, within trkH-2 at 33.243 kb on - strand, within trkH-2 at 33.243 kb on - strand, within trkH-2 at 33.243 kb on - strand, within trkH-2 at 33.245 kb on + strand, within trkH-2 at 33.283 kb on + strand, within trkH-2 at 33.327 kb on + strand, within trkH-2 at 33.366 kb on - strand, within trkH-2 at 33.424 kb on + strand, within trkH-2 at 33.424 kb on + strand, within trkH-2 at 33.424 kb on + strand, within trkH-2 at 33.432 kb on - strand, within trkH-2 at 33.502 kb on + strand, within trkH-2 at 33.523 kb on - strand, within trkH-2 at 33.571 kb on + strand at 33.582 kb on - strand at 33.629 kb on + strand at 33.629 kb on + strand at 33.637 kb on - strand at 33.637 kb on - strand at 33.644 kb on - strand at 33.691 kb on + strand at 33.704 kb on - strand at 33.780 kb on - strand at 33.911 kb on - strand, within trkA at 33.913 kb on + strand, within trkA at 33.943 kb on + strand, within trkA at 34.621 kb on + strand, within trkA at 35.212 kb on - strand at 35.242 kb on - strand at 35.242 kb on - strand at 35.243 kb on + strand at 35.286 kb on - strand, within sun at 35.301 kb on + strand, within sun at 35.663 kb on - strand, within sun at 35.730 kb on + strand, within sun at 35.740 kb on + strand, within sun at 35.764 kb on - strand, within sun at 35.843 kb on + strand, within sun at 35.843 kb on + strand, within sun at 35.915 kb on - strand, within sun at 35.922 kb on + strand, within sun at 35.937 kb on + strand, within sun at 35.937 kb on + strand, within sun at 36.046 kb on + strand, within sun at 36.068 kb on + strand, within sun
Per-strain Table
Position Strand Gene LocusTag Fraction Cholin acetate 20 mM remove 32,730 + trkH-2 SO0028 0.33 -0.3 32,747 + trkH-2 SO0028 0.34 -1.0 32,798 - trkH-2 SO0028 0.38 +0.1 32,818 + trkH-2 SO0028 0.39 +0.2 32,890 - trkH-2 SO0028 0.44 -0.6 32,891 - trkH-2 SO0028 0.44 -0.5 32,891 - trkH-2 SO0028 0.44 -0.3 32,900 + trkH-2 SO0028 0.45 -0.2 32,908 + trkH-2 SO0028 0.45 -0.9 32,908 - trkH-2 SO0028 0.45 -0.5 32,935 + trkH-2 SO0028 0.47 -0.1 32,940 + trkH-2 SO0028 0.48 -0.1 32,948 - trkH-2 SO0028 0.48 +0.1 32,948 - trkH-2 SO0028 0.48 +2.0 32,950 - trkH-2 SO0028 0.48 +0.2 32,988 - trkH-2 SO0028 0.51 -0.9 33,068 + trkH-2 SO0028 0.57 +0.5 33,075 + trkH-2 SO0028 0.57 +0.1 33,083 - trkH-2 SO0028 0.58 -1.2 33,218 - trkH-2 SO0028 0.67 +0.2 33,235 + trkH-2 SO0028 0.68 +0.1 33,235 + trkH-2 SO0028 0.68 -0.0 33,243 - trkH-2 SO0028 0.69 +0.5 33,243 - trkH-2 SO0028 0.69 -0.2 33,243 - trkH-2 SO0028 0.69 -1.0 33,245 + trkH-2 SO0028 0.69 -0.6 33,283 + trkH-2 SO0028 0.71 +0.6 33,327 + trkH-2 SO0028 0.74 -0.0 33,366 - trkH-2 SO0028 0.77 -0.4 33,424 + trkH-2 SO0028 0.81 -0.9 33,424 + trkH-2 SO0028 0.81 -0.6 33,424 + trkH-2 SO0028 0.81 +0.0 33,432 - trkH-2 SO0028 0.82 +0.7 33,502 + trkH-2 SO0028 0.87 +0.3 33,523 - trkH-2 SO0028 0.88 -0.4 33,571 + -1.1 33,582 - -0.5 33,629 + -0.5 33,629 + +0.6 33,637 - +0.6 33,637 - +0.1 33,644 - -0.4 33,691 + -0.6 33,704 - -0.4 33,780 - -0.6 33,911 - trkA SO0029 0.15 -1.5 33,913 + trkA SO0029 0.15 -0.2 33,943 + trkA SO0029 0.17 +0.1 34,621 + trkA SO0029 0.65 -0.2 35,212 - -0.0 35,242 - -0.3 35,242 - -0.2 35,243 + +0.4 35,286 - sun SO0030 0.12 +0.3 35,301 + sun SO0030 0.13 -1.9 35,663 - sun SO0030 0.41 -0.5 35,730 + sun SO0030 0.47 -0.7 35,740 + sun SO0030 0.47 -0.4 35,764 - sun SO0030 0.49 -0.3 35,843 + sun SO0030 0.55 -1.2 35,843 + sun SO0030 0.55 -0.7 35,915 - sun SO0030 0.61 -0.4 35,922 + sun SO0030 0.61 +0.9 35,937 + sun SO0030 0.63 +0.3 35,937 + sun SO0030 0.63 -0.3 36,046 + sun SO0030 0.71 -0.7 36,068 + sun SO0030 0.73 +0.3
Or see this region's nucleotide sequence