Experiment: Def Chloride 400 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0974 and Psest_0975 are separated by 65 nucleotides Psest_0975 and Psest_0977 are separated by 395 nucleotides Psest_0977 and Psest_0978 are separated by 96 nucleotides Psest_0978 and Psest_0979 are separated by 127 nucleotides
Psest_0974: Psest_0974 - phosphoglucosamine mutase, at 1,057,735 to 1,059,072
_0974
Psest_0975: Psest_0975 - triosephosphate isomerase, at 1,059,138 to 1,059,893
_0975
Psest_0977: Psest_0977 - tRNA_Leu_GAG, at 1,060,289 to 1,060,374
_0977
Psest_0978: Psest_0978 - tRNA_Met_CAT, at 1,060,471 to 1,060,547
_0978
Psest_0979: Psest_0979 - Uncharacterized protein conserved in bacteria, at 1,060,675 to 1,061,133
_0979
Position (kb)
1059
1060 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1060.391 kb on + strand at 1060.391 kb on + strand at 1060.391 kb on + strand at 1060.422 kb on + strand at 1060.566 kb on + strand at 1060.579 kb on + strand at 1060.579 kb on + strand at 1060.652 kb on + strand at 1060.652 kb on + strand at 1060.652 kb on + strand at 1060.652 kb on + strand at 1060.652 kb on + strand at 1060.652 kb on + strand at 1060.652 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Def Chloride 400 mM remove 1,060,391 + -0.2 1,060,391 + -3.1 1,060,391 + -1.0 1,060,422 + -1.4 1,060,566 + -0.6 1,060,579 + -0.2 1,060,579 + -1.0 1,060,652 + -0.3 1,060,652 + +0.1 1,060,652 + +0.1 1,060,652 + +0.2 1,060,652 + -0.1 1,060,652 + -1.4 1,060,652 + +1.2
Or see this region's nucleotide sequence