Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0967

Experiment: Def Chloride 400 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_0966 and Psest_0967 are separated by 216 nucleotidesPsest_0967 and Psest_0968 are separated by 36 nucleotides Psest_0966: Psest_0966 - dihydrodipicolinate reductase, at 1,047,598 to 1,048,404 _0966 Psest_0967: Psest_0967 - carbamoyl-phosphate synthase, small subunit, at 1,048,621 to 1,049,769 _0967 Psest_0968: Psest_0968 - carbamoyl-phosphate synthase, large subunit, at 1,049,806 to 1,053,027 _0968 Position (kb) 1048 1049 1050Strain fitness (log2 ratio) -1 0 1at 1048.493 kb on + strandat 1048.493 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Def Chloride 400 mM
remove
1,048,493 + -1.6
1,048,493 + +0.3

Or see this region's nucleotide sequence