Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2837

Experiment: Def Chloride 400 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2836 and Psest_2837 overlap by 4 nucleotidesPsest_2837 and Psest_2838 overlap by 7 nucleotidesPsest_2838 and Psest_2839 are separated by 133 nucleotides Psest_2836: Psest_2836 - 1-deoxy-D-xylulose 5-phosphate reductoisomerase, at 3,027,830 to 3,029,020 _2836 Psest_2837: Psest_2837 - CDP-diglyceride synthetase, at 3,029,017 to 3,029,832 _2837 Psest_2838: Psest_2838 - undecaprenyl diphosphate synthase, at 3,029,826 to 3,030,587 _2838 Psest_2839: Psest_2839 - ribosome recycling factor, at 3,030,721 to 3,031,278 _2839 Position (kb) 3029 3030Strain fitness (log2 ratio) -1 0 1at 3030.598 kb on - strandat 3030.598 kb on - strandat 3030.598 kb on - strandat 3030.598 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Chloride 400 mM
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3,030,598 - +1.0
3,030,598 - +0.6
3,030,598 - +0.3
3,030,598 - +1.4

Or see this region's nucleotide sequence