Experiment: Def Chloride 400 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2468 and Psest_2469 are separated by 69 nucleotides Psest_2469 and Psest_2470 overlap by 4 nucleotides Psest_2470 and Psest_2471 are separated by 22 nucleotides Psest_2471 and Psest_2472 are separated by 430 nucleotides Psest_2472 and Psest_2473 are separated by 11 nucleotides
Psest_2468: Psest_2468 - uncharacterized domain 1, at 2,639,099 to 2,639,542
_2468
Psest_2469: Psest_2469 - phosphohistidine phosphatase SixA, at 2,639,612 to 2,640,070
_2469
Psest_2470: Psest_2470 - hypothetical protein, at 2,640,067 to 2,640,423
_2470
Psest_2471: Psest_2471 - Glycerol-3-phosphate dehydrogenase, at 2,640,446 to 2,641,468
_2471
Psest_2472: Psest_2472 - beta-hydroxyacyl-[acyl carrier protein] dehydratase FabA, at 2,641,899 to 2,642,414
_2472
Psest_2473: Psest_2473 - 3-oxoacyl-(acyl-carrier-protein) synthase, at 2,642,426 to 2,643,643
_2473
Position (kb)
2640
2641
2642 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2639.462 kb on + strand, within Psest_2468 at 2639.462 kb on + strand, within Psest_2468 at 2639.462 kb on + strand, within Psest_2468 at 2639.462 kb on + strand, within Psest_2468 at 2639.462 kb on + strand, within Psest_2468 at 2639.462 kb on + strand, within Psest_2468 at 2639.462 kb on + strand, within Psest_2468 at 2639.463 kb on - strand, within Psest_2468 at 2639.463 kb on - strand, within Psest_2468 at 2639.463 kb on - strand, within Psest_2468 at 2639.463 kb on - strand, within Psest_2468 at 2639.463 kb on - strand, within Psest_2468 at 2639.463 kb on - strand, within Psest_2468 at 2639.465 kb on - strand, within Psest_2468 at 2639.549 kb on + strand at 2639.563 kb on - strand at 2639.928 kb on - strand, within Psest_2469 at 2640.062 kb on + strand at 2640.063 kb on - strand at 2640.195 kb on + strand, within Psest_2470 at 2640.231 kb on - strand, within Psest_2470 at 2640.231 kb on - strand, within Psest_2470 at 2640.412 kb on - strand at 2640.436 kb on + strand at 2641.514 kb on + strand at 2641.514 kb on + strand at 2641.514 kb on + strand at 2641.514 kb on + strand at 2641.514 kb on + strand at 2641.514 kb on + strand at 2641.515 kb on - strand at 2641.515 kb on - strand at 2641.515 kb on - strand at 2641.515 kb on - strand at 2641.515 kb on - strand at 2641.661 kb on + strand at 2641.662 kb on - strand at 2641.663 kb on + strand at 2641.709 kb on + strand at 2641.811 kb on + strand at 2641.811 kb on + strand at 2641.811 kb on + strand at 2641.811 kb on + strand at 2641.817 kb on + strand at 2641.817 kb on + strand at 2641.856 kb on + strand at 2641.856 kb on + strand at 2641.856 kb on + strand at 2641.856 kb on + strand at 2641.856 kb on + strand at 2641.856 kb on + strand at 2641.856 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Def Chloride 400 mM remove 2,639,462 + Psest_2468 0.82 +0.0 2,639,462 + Psest_2468 0.82 +0.2 2,639,462 + Psest_2468 0.82 +0.1 2,639,462 + Psest_2468 0.82 -0.5 2,639,462 + Psest_2468 0.82 +0.4 2,639,462 + Psest_2468 0.82 +0.4 2,639,462 + Psest_2468 0.82 +0.2 2,639,463 - Psest_2468 0.82 +1.9 2,639,463 - Psest_2468 0.82 +0.8 2,639,463 - Psest_2468 0.82 -0.9 2,639,463 - Psest_2468 0.82 +1.4 2,639,463 - Psest_2468 0.82 +0.9 2,639,463 - Psest_2468 0.82 +1.1 2,639,465 - Psest_2468 0.82 +0.4 2,639,549 + +0.7 2,639,563 - +1.5 2,639,928 - Psest_2469 0.69 -2.5 2,640,062 + -0.5 2,640,063 - -0.0 2,640,195 + Psest_2470 0.36 -0.3 2,640,231 - Psest_2470 0.46 +0.5 2,640,231 - Psest_2470 0.46 -1.9 2,640,412 - +0.7 2,640,436 + -1.5 2,641,514 + -0.0 2,641,514 + -0.8 2,641,514 + +0.0 2,641,514 + +0.3 2,641,514 + -0.6 2,641,514 + +0.7 2,641,515 - -2.2 2,641,515 - -1.4 2,641,515 - +0.2 2,641,515 - +1.2 2,641,515 - -0.4 2,641,661 + -1.2 2,641,662 - -0.8 2,641,663 + +0.2 2,641,709 + -0.8 2,641,811 + -0.1 2,641,811 + -0.7 2,641,811 + +0.1 2,641,811 + -0.1 2,641,817 + +0.5 2,641,817 + -0.6 2,641,856 + -0.4 2,641,856 + -2.8 2,641,856 + +0.8 2,641,856 + -2.0 2,641,856 + +1.0 2,641,856 + -0.6 2,641,856 + +0.0
Or see this region's nucleotide sequence