Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2471

Experiment: Def Chloride 400 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2468 and Psest_2469 are separated by 69 nucleotidesPsest_2469 and Psest_2470 overlap by 4 nucleotidesPsest_2470 and Psest_2471 are separated by 22 nucleotidesPsest_2471 and Psest_2472 are separated by 430 nucleotidesPsest_2472 and Psest_2473 are separated by 11 nucleotides Psest_2468: Psest_2468 - uncharacterized domain 1, at 2,639,099 to 2,639,542 _2468 Psest_2469: Psest_2469 - phosphohistidine phosphatase SixA, at 2,639,612 to 2,640,070 _2469 Psest_2470: Psest_2470 - hypothetical protein, at 2,640,067 to 2,640,423 _2470 Psest_2471: Psest_2471 - Glycerol-3-phosphate dehydrogenase, at 2,640,446 to 2,641,468 _2471 Psest_2472: Psest_2472 - beta-hydroxyacyl-[acyl carrier protein] dehydratase FabA, at 2,641,899 to 2,642,414 _2472 Psest_2473: Psest_2473 - 3-oxoacyl-(acyl-carrier-protein) synthase, at 2,642,426 to 2,643,643 _2473 Position (kb) 2640 2641 2642Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2639.462 kb on + strand, within Psest_2468at 2639.462 kb on + strand, within Psest_2468at 2639.462 kb on + strand, within Psest_2468at 2639.462 kb on + strand, within Psest_2468at 2639.462 kb on + strand, within Psest_2468at 2639.462 kb on + strand, within Psest_2468at 2639.462 kb on + strand, within Psest_2468at 2639.463 kb on - strand, within Psest_2468at 2639.463 kb on - strand, within Psest_2468at 2639.463 kb on - strand, within Psest_2468at 2639.463 kb on - strand, within Psest_2468at 2639.463 kb on - strand, within Psest_2468at 2639.463 kb on - strand, within Psest_2468at 2639.465 kb on - strand, within Psest_2468at 2639.549 kb on + strandat 2639.563 kb on - strandat 2639.928 kb on - strand, within Psest_2469at 2640.062 kb on + strandat 2640.063 kb on - strandat 2640.195 kb on + strand, within Psest_2470at 2640.231 kb on - strand, within Psest_2470at 2640.231 kb on - strand, within Psest_2470at 2640.412 kb on - strandat 2640.436 kb on + strandat 2641.514 kb on + strandat 2641.514 kb on + strandat 2641.514 kb on + strandat 2641.514 kb on + strandat 2641.514 kb on + strandat 2641.514 kb on + strandat 2641.515 kb on - strandat 2641.515 kb on - strandat 2641.515 kb on - strandat 2641.515 kb on - strandat 2641.515 kb on - strandat 2641.661 kb on + strandat 2641.662 kb on - strandat 2641.663 kb on + strandat 2641.709 kb on + strandat 2641.811 kb on + strandat 2641.811 kb on + strandat 2641.811 kb on + strandat 2641.811 kb on + strandat 2641.817 kb on + strandat 2641.817 kb on + strandat 2641.856 kb on + strandat 2641.856 kb on + strandat 2641.856 kb on + strandat 2641.856 kb on + strandat 2641.856 kb on + strandat 2641.856 kb on + strandat 2641.856 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Chloride 400 mM
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2,639,462 + Psest_2468 0.82 +0.0
2,639,462 + Psest_2468 0.82 +0.2
2,639,462 + Psest_2468 0.82 +0.1
2,639,462 + Psest_2468 0.82 -0.5
2,639,462 + Psest_2468 0.82 +0.4
2,639,462 + Psest_2468 0.82 +0.4
2,639,462 + Psest_2468 0.82 +0.2
2,639,463 - Psest_2468 0.82 +1.9
2,639,463 - Psest_2468 0.82 +0.8
2,639,463 - Psest_2468 0.82 -0.9
2,639,463 - Psest_2468 0.82 +1.4
2,639,463 - Psest_2468 0.82 +0.9
2,639,463 - Psest_2468 0.82 +1.1
2,639,465 - Psest_2468 0.82 +0.4
2,639,549 + +0.7
2,639,563 - +1.5
2,639,928 - Psest_2469 0.69 -2.5
2,640,062 + -0.5
2,640,063 - -0.0
2,640,195 + Psest_2470 0.36 -0.3
2,640,231 - Psest_2470 0.46 +0.5
2,640,231 - Psest_2470 0.46 -1.9
2,640,412 - +0.7
2,640,436 + -1.5
2,641,514 + -0.0
2,641,514 + -0.8
2,641,514 + +0.0
2,641,514 + +0.3
2,641,514 + -0.6
2,641,514 + +0.7
2,641,515 - -2.2
2,641,515 - -1.4
2,641,515 - +0.2
2,641,515 - +1.2
2,641,515 - -0.4
2,641,661 + -1.2
2,641,662 - -0.8
2,641,663 + +0.2
2,641,709 + -0.8
2,641,811 + -0.1
2,641,811 + -0.7
2,641,811 + +0.1
2,641,811 + -0.1
2,641,817 + +0.5
2,641,817 + -0.6
2,641,856 + -0.4
2,641,856 + -2.8
2,641,856 + +0.8
2,641,856 + -2.0
2,641,856 + +1.0
2,641,856 + -0.6
2,641,856 + +0.0

Or see this region's nucleotide sequence