Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1710

Experiment: Def Chloride 400 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1708 and Psest_1709 overlap by 4 nucleotidesPsest_1709 and Psest_1710 are separated by 103 nucleotidesPsest_1710 and Psest_1711 are separated by 34 nucleotidesPsest_1711 and Psest_1712 are separated by 42 nucleotides Psest_1708: Psest_1708 - hypothetical protein, at 1,814,216 to 1,814,572 _1708 Psest_1709: Psest_1709 - Outer membrane protein and related peptidoglycan-associated (lipo)proteins, at 1,814,569 to 1,815,366 _1709 Psest_1710: Psest_1710 - Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs, at 1,815,470 to 1,816,900 _1710 Psest_1711: Psest_1711 - hypothetical protein, at 1,816,935 to 1,817,450 _1711 Psest_1712: Psest_1712 - PAS domain S-box/diguanylate cyclase (GGDEF) domain, at 1,817,493 to 1,820,051 _1712 Position (kb) 1815 1816 1817Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1814.544 kb on + strandat 1814.545 kb on - strandat 1814.583 kb on - strandat 1814.612 kb on + strandat 1814.612 kb on + strandat 1814.613 kb on - strandat 1814.717 kb on + strand, within Psest_1709at 1814.718 kb on - strand, within Psest_1709at 1814.765 kb on - strand, within Psest_1709at 1814.800 kb on + strand, within Psest_1709at 1815.119 kb on + strand, within Psest_1709at 1815.373 kb on + strandat 1815.373 kb on + strandat 1815.374 kb on - strandat 1815.374 kb on - strandat 1815.374 kb on - strandat 1815.374 kb on - strandat 1815.374 kb on - strandat 1815.374 kb on - strandat 1815.374 kb on - strandat 1815.488 kb on + strandat 1815.617 kb on + strand, within Psest_1710at 1815.617 kb on + strand, within Psest_1710at 1815.617 kb on + strand, within Psest_1710at 1815.617 kb on + strand, within Psest_1710at 1815.617 kb on + strand, within Psest_1710at 1815.618 kb on - strand, within Psest_1710at 1815.618 kb on - strand, within Psest_1710at 1815.671 kb on + strand, within Psest_1710at 1815.671 kb on + strand, within Psest_1710at 1815.671 kb on + strand, within Psest_1710at 1815.671 kb on + strand, within Psest_1710at 1815.671 kb on + strand, within Psest_1710at 1815.671 kb on + strand, within Psest_1710at 1815.671 kb on + strand, within Psest_1710at 1815.671 kb on + strand, within Psest_1710at 1815.671 kb on + strand, within Psest_1710at 1815.671 kb on + strand, within Psest_1710at 1815.671 kb on + strand, within Psest_1710at 1815.671 kb on + strand, within Psest_1710at 1815.671 kb on + strand, within Psest_1710at 1815.671 kb on + strand, within Psest_1710at 1815.671 kb on + strand, within Psest_1710at 1815.672 kb on - strand, within Psest_1710at 1815.672 kb on - strand, within Psest_1710at 1815.672 kb on - strand, within Psest_1710at 1815.672 kb on - strand, within Psest_1710at 1815.672 kb on - strand, within Psest_1710at 1815.672 kb on - strand, within Psest_1710at 1815.672 kb on - strand, within Psest_1710at 1815.672 kb on - strand, within Psest_1710at 1815.672 kb on - strand, within Psest_1710at 1815.672 kb on - strand, within Psest_1710at 1815.694 kb on + strand, within Psest_1710at 1815.694 kb on + strand, within Psest_1710at 1815.695 kb on - strand, within Psest_1710at 1815.768 kb on + strand, within Psest_1710at 1815.830 kb on + strand, within Psest_1710at 1815.902 kb on + strand, within Psest_1710at 1815.902 kb on + strand, within Psest_1710at 1815.902 kb on + strand, within Psest_1710at 1815.903 kb on - strand, within Psest_1710at 1815.903 kb on - strand, within Psest_1710at 1815.903 kb on - strand, within Psest_1710at 1815.903 kb on - strand, within Psest_1710at 1815.903 kb on - strand, within Psest_1710at 1815.920 kb on + strand, within Psest_1710at 1815.920 kb on + strand, within Psest_1710at 1816.039 kb on - strand, within Psest_1710at 1816.082 kb on + strand, within Psest_1710at 1816.082 kb on + strand, within Psest_1710at 1816.082 kb on + strand, within Psest_1710at 1816.082 kb on + strand, within Psest_1710at 1816.082 kb on + strand, within Psest_1710at 1816.082 kb on + strand, within Psest_1710at 1816.082 kb on + strand, within Psest_1710at 1816.083 kb on - strand, within Psest_1710at 1816.083 kb on - strand, within Psest_1710at 1816.083 kb on - strand, within Psest_1710at 1816.086 kb on - strand, within Psest_1710at 1816.325 kb on + strand, within Psest_1710at 1816.325 kb on + strand, within Psest_1710at 1816.325 kb on + strand, within Psest_1710at 1816.355 kb on + strand, within Psest_1710at 1816.356 kb on - strand, within Psest_1710at 1816.397 kb on + strand, within Psest_1710at 1816.397 kb on + strand, within Psest_1710at 1816.397 kb on + strand, within Psest_1710at 1816.397 kb on + strand, within Psest_1710at 1816.397 kb on + strand, within Psest_1710at 1816.398 kb on - strand, within Psest_1710at 1816.398 kb on - strand, within Psest_1710at 1816.398 kb on - strand, within Psest_1710at 1816.542 kb on - strand, within Psest_1710at 1816.626 kb on + strand, within Psest_1710at 1816.634 kb on + strand, within Psest_1710at 1816.634 kb on + strand, within Psest_1710at 1816.635 kb on - strand, within Psest_1710at 1816.855 kb on + strandat 1816.898 kb on + strandat 1816.899 kb on - strandat 1816.901 kb on + strandat 1816.901 kb on + strandat 1816.901 kb on + strandat 1816.901 kb on + strandat 1816.902 kb on - strandat 1816.902 kb on - strandat 1816.907 kb on + strandat 1816.926 kb on + strandat 1816.926 kb on + strandat 1816.926 kb on + strandat 1816.926 kb on + strandat 1816.926 kb on + strandat 1816.927 kb on - strandat 1816.927 kb on - strandat 1816.927 kb on - strandat 1816.927 kb on - strandat 1816.927 kb on - strandat 1816.960 kb on + strandat 1817.481 kb on + strandat 1817.481 kb on + strandat 1817.731 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Chloride 400 mM
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1,814,544 + -0.5
1,814,545 - -2.5
1,814,583 - -1.1
1,814,612 + +0.7
1,814,612 + +0.8
1,814,613 - +0.0
1,814,717 + Psest_1709 0.19 -0.5
1,814,718 - Psest_1709 0.19 -0.1
1,814,765 - Psest_1709 0.25 +0.3
1,814,800 + Psest_1709 0.29 -0.8
1,815,119 + Psest_1709 0.69 -0.4
1,815,373 + +1.6
1,815,373 + +1.0
1,815,374 - -3.2
1,815,374 - -1.2
1,815,374 - -0.2
1,815,374 - -2.3
1,815,374 - -0.1
1,815,374 - -0.3
1,815,374 - +0.8
1,815,488 + +0.1
1,815,617 + Psest_1710 0.10 -0.6
1,815,617 + Psest_1710 0.10 -1.0
1,815,617 + Psest_1710 0.10 -1.3
1,815,617 + Psest_1710 0.10 +1.2
1,815,617 + Psest_1710 0.10 -2.1
1,815,618 - Psest_1710 0.10 +0.6
1,815,618 - Psest_1710 0.10 -0.3
1,815,671 + Psest_1710 0.14 -0.2
1,815,671 + Psest_1710 0.14 +2.2
1,815,671 + Psest_1710 0.14 +0.6
1,815,671 + Psest_1710 0.14 +0.4
1,815,671 + Psest_1710 0.14 -2.5
1,815,671 + Psest_1710 0.14 -1.5
1,815,671 + Psest_1710 0.14 -0.1
1,815,671 + Psest_1710 0.14 -0.0
1,815,671 + Psest_1710 0.14 -0.2
1,815,671 + Psest_1710 0.14 -0.5
1,815,671 + Psest_1710 0.14 +0.2
1,815,671 + Psest_1710 0.14 -0.2
1,815,671 + Psest_1710 0.14 -0.3
1,815,671 + Psest_1710 0.14 -0.5
1,815,671 + Psest_1710 0.14 +2.1
1,815,672 - Psest_1710 0.14 -2.0
1,815,672 - Psest_1710 0.14 -0.8
1,815,672 - Psest_1710 0.14 -0.1
1,815,672 - Psest_1710 0.14 -1.1
1,815,672 - Psest_1710 0.14 -0.1
1,815,672 - Psest_1710 0.14 +1.2
1,815,672 - Psest_1710 0.14 +1.0
1,815,672 - Psest_1710 0.14 -1.0
1,815,672 - Psest_1710 0.14 -0.2
1,815,672 - Psest_1710 0.14 -1.2
1,815,694 + Psest_1710 0.16 -0.5
1,815,694 + Psest_1710 0.16 -1.1
1,815,695 - Psest_1710 0.16 -1.7
1,815,768 + Psest_1710 0.21 +0.2
1,815,830 + Psest_1710 0.25 +0.7
1,815,902 + Psest_1710 0.30 -0.7
1,815,902 + Psest_1710 0.30 +1.1
1,815,902 + Psest_1710 0.30 -2.1
1,815,903 - Psest_1710 0.30 +0.4
1,815,903 - Psest_1710 0.30 +1.2
1,815,903 - Psest_1710 0.30 -2.7
1,815,903 - Psest_1710 0.30 +0.7
1,815,903 - Psest_1710 0.30 +0.6
1,815,920 + Psest_1710 0.31 -0.5
1,815,920 + Psest_1710 0.31 -0.3
1,816,039 - Psest_1710 0.40 -0.4
1,816,082 + Psest_1710 0.43 -1.0
1,816,082 + Psest_1710 0.43 -0.1
1,816,082 + Psest_1710 0.43 +0.3
1,816,082 + Psest_1710 0.43 -1.8
1,816,082 + Psest_1710 0.43 +0.4
1,816,082 + Psest_1710 0.43 -0.6
1,816,082 + Psest_1710 0.43 -1.1
1,816,083 - Psest_1710 0.43 -1.7
1,816,083 - Psest_1710 0.43 -0.9
1,816,083 - Psest_1710 0.43 +0.6
1,816,086 - Psest_1710 0.43 -1.5
1,816,325 + Psest_1710 0.60 +0.5
1,816,325 + Psest_1710 0.60 +0.7
1,816,325 + Psest_1710 0.60 +0.7
1,816,355 + Psest_1710 0.62 +0.4
1,816,356 - Psest_1710 0.62 +0.7
1,816,397 + Psest_1710 0.65 -0.9
1,816,397 + Psest_1710 0.65 +0.4
1,816,397 + Psest_1710 0.65 -0.5
1,816,397 + Psest_1710 0.65 -1.8
1,816,397 + Psest_1710 0.65 -0.1
1,816,398 - Psest_1710 0.65 -1.6
1,816,398 - Psest_1710 0.65 -1.0
1,816,398 - Psest_1710 0.65 -1.4
1,816,542 - Psest_1710 0.75 +0.4
1,816,626 + Psest_1710 0.81 +0.1
1,816,634 + Psest_1710 0.81 -0.4
1,816,634 + Psest_1710 0.81 -0.8
1,816,635 - Psest_1710 0.81 +2.9
1,816,855 + -1.0
1,816,898 + -2.0
1,816,899 - +0.3
1,816,901 + +0.7
1,816,901 + +1.3
1,816,901 + -1.0
1,816,901 + -0.7
1,816,902 - +1.2
1,816,902 - +1.4
1,816,907 + -0.1
1,816,926 + +0.6
1,816,926 + +0.6
1,816,926 + +0.6
1,816,926 + -0.5
1,816,926 + -0.2
1,816,927 - +0.1
1,816,927 - -0.9
1,816,927 - +0.1
1,816,927 - -1.2
1,816,927 - +2.3
1,816,960 + +0.1
1,817,481 + -0.1
1,817,481 + -0.6
1,817,731 - -0.0

Or see this region's nucleotide sequence