Experiment: Def Chloride 400 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1708 and Psest_1709 overlap by 4 nucleotides Psest_1709 and Psest_1710 are separated by 103 nucleotides Psest_1710 and Psest_1711 are separated by 34 nucleotides Psest_1711 and Psest_1712 are separated by 42 nucleotides
Psest_1708: Psest_1708 - hypothetical protein, at 1,814,216 to 1,814,572
_1708
Psest_1709: Psest_1709 - Outer membrane protein and related peptidoglycan-associated (lipo)proteins, at 1,814,569 to 1,815,366
_1709
Psest_1710: Psest_1710 - Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs, at 1,815,470 to 1,816,900
_1710
Psest_1711: Psest_1711 - hypothetical protein, at 1,816,935 to 1,817,450
_1711
Psest_1712: Psest_1712 - PAS domain S-box/diguanylate cyclase (GGDEF) domain, at 1,817,493 to 1,820,051
_1712
Position (kb)
1815
1816
1817 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1814.544 kb on + strand at 1814.545 kb on - strand at 1814.583 kb on - strand at 1814.612 kb on + strand at 1814.612 kb on + strand at 1814.613 kb on - strand at 1814.717 kb on + strand, within Psest_1709 at 1814.718 kb on - strand, within Psest_1709 at 1814.765 kb on - strand, within Psest_1709 at 1814.800 kb on + strand, within Psest_1709 at 1815.119 kb on + strand, within Psest_1709 at 1815.373 kb on + strand at 1815.373 kb on + strand at 1815.374 kb on - strand at 1815.374 kb on - strand at 1815.374 kb on - strand at 1815.374 kb on - strand at 1815.374 kb on - strand at 1815.374 kb on - strand at 1815.374 kb on - strand at 1815.488 kb on + strand at 1815.617 kb on + strand, within Psest_1710 at 1815.617 kb on + strand, within Psest_1710 at 1815.617 kb on + strand, within Psest_1710 at 1815.617 kb on + strand, within Psest_1710 at 1815.617 kb on + strand, within Psest_1710 at 1815.618 kb on - strand, within Psest_1710 at 1815.618 kb on - strand, within Psest_1710 at 1815.671 kb on + strand, within Psest_1710 at 1815.671 kb on + strand, within Psest_1710 at 1815.671 kb on + strand, within Psest_1710 at 1815.671 kb on + strand, within Psest_1710 at 1815.671 kb on + strand, within Psest_1710 at 1815.671 kb on + strand, within Psest_1710 at 1815.671 kb on + strand, within Psest_1710 at 1815.671 kb on + strand, within Psest_1710 at 1815.671 kb on + strand, within Psest_1710 at 1815.671 kb on + strand, within Psest_1710 at 1815.671 kb on + strand, within Psest_1710 at 1815.671 kb on + strand, within Psest_1710 at 1815.671 kb on + strand, within Psest_1710 at 1815.671 kb on + strand, within Psest_1710 at 1815.671 kb on + strand, within Psest_1710 at 1815.672 kb on - strand, within Psest_1710 at 1815.672 kb on - strand, within Psest_1710 at 1815.672 kb on - strand, within Psest_1710 at 1815.672 kb on - strand, within Psest_1710 at 1815.672 kb on - strand, within Psest_1710 at 1815.672 kb on - strand, within Psest_1710 at 1815.672 kb on - strand, within Psest_1710 at 1815.672 kb on - strand, within Psest_1710 at 1815.672 kb on - strand, within Psest_1710 at 1815.672 kb on - strand, within Psest_1710 at 1815.694 kb on + strand, within Psest_1710 at 1815.694 kb on + strand, within Psest_1710 at 1815.695 kb on - strand, within Psest_1710 at 1815.768 kb on + strand, within Psest_1710 at 1815.830 kb on + strand, within Psest_1710 at 1815.902 kb on + strand, within Psest_1710 at 1815.902 kb on + strand, within Psest_1710 at 1815.902 kb on + strand, within Psest_1710 at 1815.903 kb on - strand, within Psest_1710 at 1815.903 kb on - strand, within Psest_1710 at 1815.903 kb on - strand, within Psest_1710 at 1815.903 kb on - strand, within Psest_1710 at 1815.903 kb on - strand, within Psest_1710 at 1815.920 kb on + strand, within Psest_1710 at 1815.920 kb on + strand, within Psest_1710 at 1816.039 kb on - strand, within Psest_1710 at 1816.082 kb on + strand, within Psest_1710 at 1816.082 kb on + strand, within Psest_1710 at 1816.082 kb on + strand, within Psest_1710 at 1816.082 kb on + strand, within Psest_1710 at 1816.082 kb on + strand, within Psest_1710 at 1816.082 kb on + strand, within Psest_1710 at 1816.082 kb on + strand, within Psest_1710 at 1816.083 kb on - strand, within Psest_1710 at 1816.083 kb on - strand, within Psest_1710 at 1816.083 kb on - strand, within Psest_1710 at 1816.086 kb on - strand, within Psest_1710 at 1816.325 kb on + strand, within Psest_1710 at 1816.325 kb on + strand, within Psest_1710 at 1816.325 kb on + strand, within Psest_1710 at 1816.355 kb on + strand, within Psest_1710 at 1816.356 kb on - strand, within Psest_1710 at 1816.397 kb on + strand, within Psest_1710 at 1816.397 kb on + strand, within Psest_1710 at 1816.397 kb on + strand, within Psest_1710 at 1816.397 kb on + strand, within Psest_1710 at 1816.397 kb on + strand, within Psest_1710 at 1816.398 kb on - strand, within Psest_1710 at 1816.398 kb on - strand, within Psest_1710 at 1816.398 kb on - strand, within Psest_1710 at 1816.542 kb on - strand, within Psest_1710 at 1816.626 kb on + strand, within Psest_1710 at 1816.634 kb on + strand, within Psest_1710 at 1816.634 kb on + strand, within Psest_1710 at 1816.635 kb on - strand, within Psest_1710 at 1816.855 kb on + strand at 1816.898 kb on + strand at 1816.899 kb on - strand at 1816.901 kb on + strand at 1816.901 kb on + strand at 1816.901 kb on + strand at 1816.901 kb on + strand at 1816.902 kb on - strand at 1816.902 kb on - strand at 1816.907 kb on + strand at 1816.926 kb on + strand at 1816.926 kb on + strand at 1816.926 kb on + strand at 1816.926 kb on + strand at 1816.926 kb on + strand at 1816.927 kb on - strand at 1816.927 kb on - strand at 1816.927 kb on - strand at 1816.927 kb on - strand at 1816.927 kb on - strand at 1816.960 kb on + strand at 1817.481 kb on + strand at 1817.481 kb on + strand at 1817.731 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Def Chloride 400 mM remove 1,814,544 + -0.5 1,814,545 - -2.5 1,814,583 - -1.1 1,814,612 + +0.7 1,814,612 + +0.8 1,814,613 - +0.0 1,814,717 + Psest_1709 0.19 -0.5 1,814,718 - Psest_1709 0.19 -0.1 1,814,765 - Psest_1709 0.25 +0.3 1,814,800 + Psest_1709 0.29 -0.8 1,815,119 + Psest_1709 0.69 -0.4 1,815,373 + +1.6 1,815,373 + +1.0 1,815,374 - -3.2 1,815,374 - -1.2 1,815,374 - -0.2 1,815,374 - -2.3 1,815,374 - -0.1 1,815,374 - -0.3 1,815,374 - +0.8 1,815,488 + +0.1 1,815,617 + Psest_1710 0.10 -0.6 1,815,617 + Psest_1710 0.10 -1.0 1,815,617 + Psest_1710 0.10 -1.3 1,815,617 + Psest_1710 0.10 +1.2 1,815,617 + Psest_1710 0.10 -2.1 1,815,618 - Psest_1710 0.10 +0.6 1,815,618 - Psest_1710 0.10 -0.3 1,815,671 + Psest_1710 0.14 -0.2 1,815,671 + Psest_1710 0.14 +2.2 1,815,671 + Psest_1710 0.14 +0.6 1,815,671 + Psest_1710 0.14 +0.4 1,815,671 + Psest_1710 0.14 -2.5 1,815,671 + Psest_1710 0.14 -1.5 1,815,671 + Psest_1710 0.14 -0.1 1,815,671 + Psest_1710 0.14 -0.0 1,815,671 + Psest_1710 0.14 -0.2 1,815,671 + Psest_1710 0.14 -0.5 1,815,671 + Psest_1710 0.14 +0.2 1,815,671 + Psest_1710 0.14 -0.2 1,815,671 + Psest_1710 0.14 -0.3 1,815,671 + Psest_1710 0.14 -0.5 1,815,671 + Psest_1710 0.14 +2.1 1,815,672 - Psest_1710 0.14 -2.0 1,815,672 - Psest_1710 0.14 -0.8 1,815,672 - Psest_1710 0.14 -0.1 1,815,672 - Psest_1710 0.14 -1.1 1,815,672 - Psest_1710 0.14 -0.1 1,815,672 - Psest_1710 0.14 +1.2 1,815,672 - Psest_1710 0.14 +1.0 1,815,672 - Psest_1710 0.14 -1.0 1,815,672 - Psest_1710 0.14 -0.2 1,815,672 - Psest_1710 0.14 -1.2 1,815,694 + Psest_1710 0.16 -0.5 1,815,694 + Psest_1710 0.16 -1.1 1,815,695 - Psest_1710 0.16 -1.7 1,815,768 + Psest_1710 0.21 +0.2 1,815,830 + Psest_1710 0.25 +0.7 1,815,902 + Psest_1710 0.30 -0.7 1,815,902 + Psest_1710 0.30 +1.1 1,815,902 + Psest_1710 0.30 -2.1 1,815,903 - Psest_1710 0.30 +0.4 1,815,903 - Psest_1710 0.30 +1.2 1,815,903 - Psest_1710 0.30 -2.7 1,815,903 - Psest_1710 0.30 +0.7 1,815,903 - Psest_1710 0.30 +0.6 1,815,920 + Psest_1710 0.31 -0.5 1,815,920 + Psest_1710 0.31 -0.3 1,816,039 - Psest_1710 0.40 -0.4 1,816,082 + Psest_1710 0.43 -1.0 1,816,082 + Psest_1710 0.43 -0.1 1,816,082 + Psest_1710 0.43 +0.3 1,816,082 + Psest_1710 0.43 -1.8 1,816,082 + Psest_1710 0.43 +0.4 1,816,082 + Psest_1710 0.43 -0.6 1,816,082 + Psest_1710 0.43 -1.1 1,816,083 - Psest_1710 0.43 -1.7 1,816,083 - Psest_1710 0.43 -0.9 1,816,083 - Psest_1710 0.43 +0.6 1,816,086 - Psest_1710 0.43 -1.5 1,816,325 + Psest_1710 0.60 +0.5 1,816,325 + Psest_1710 0.60 +0.7 1,816,325 + Psest_1710 0.60 +0.7 1,816,355 + Psest_1710 0.62 +0.4 1,816,356 - Psest_1710 0.62 +0.7 1,816,397 + Psest_1710 0.65 -0.9 1,816,397 + Psest_1710 0.65 +0.4 1,816,397 + Psest_1710 0.65 -0.5 1,816,397 + Psest_1710 0.65 -1.8 1,816,397 + Psest_1710 0.65 -0.1 1,816,398 - Psest_1710 0.65 -1.6 1,816,398 - Psest_1710 0.65 -1.0 1,816,398 - Psest_1710 0.65 -1.4 1,816,542 - Psest_1710 0.75 +0.4 1,816,626 + Psest_1710 0.81 +0.1 1,816,634 + Psest_1710 0.81 -0.4 1,816,634 + Psest_1710 0.81 -0.8 1,816,635 - Psest_1710 0.81 +2.9 1,816,855 + -1.0 1,816,898 + -2.0 1,816,899 - +0.3 1,816,901 + +0.7 1,816,901 + +1.3 1,816,901 + -1.0 1,816,901 + -0.7 1,816,902 - +1.2 1,816,902 - +1.4 1,816,907 + -0.1 1,816,926 + +0.6 1,816,926 + +0.6 1,816,926 + +0.6 1,816,926 + -0.5 1,816,926 + -0.2 1,816,927 - +0.1 1,816,927 - -0.9 1,816,927 - +0.1 1,816,927 - -1.2 1,816,927 - +2.3 1,816,960 + +0.1 1,817,481 + -0.1 1,817,481 + -0.6 1,817,731 - -0.0
Or see this region's nucleotide sequence