Experiment: Def Chloride 400 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1328 and Psest_1329 are separated by 1 nucleotides Psest_1329 and Psest_1330 overlap by 4 nucleotides Psest_1330 and Psest_1331 are separated by 241 nucleotides Psest_1331 and Psest_1332 are separated by 69 nucleotides
Psest_1328: Psest_1328 - hypothetical protein, at 1,431,700 to 1,431,996
_1328
Psest_1329: Psest_1329 - Alkylated DNA repair protein, at 1,431,998 to 1,432,615
_1329
Psest_1330: Psest_1330 - hypothetical protein, at 1,432,612 to 1,432,773
_1330
Psest_1331: Psest_1331 - hypothetical protein, at 1,433,015 to 1,433,125
_1331
Psest_1332: Psest_1332 - alpha-1,6-glucosidases, pullulanase-type, at 1,433,195 to 1,436,314
_1332
Position (kb)
1432
1433 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1431.639 kb on - strand at 1431.639 kb on - strand at 1431.682 kb on + strand at 1431.685 kb on - strand at 1431.685 kb on - strand at 1431.726 kb on - strand at 1431.726 kb on - strand at 1432.151 kb on + strand, within Psest_1329 at 1432.151 kb on + strand, within Psest_1329 at 1432.151 kb on + strand, within Psest_1329 at 1432.151 kb on + strand, within Psest_1329 at 1432.152 kb on - strand, within Psest_1329 at 1432.152 kb on - strand, within Psest_1329 at 1432.152 kb on - strand, within Psest_1329 at 1432.152 kb on - strand, within Psest_1329 at 1432.152 kb on - strand, within Psest_1329 at 1432.152 kb on - strand, within Psest_1329 at 1432.152 kb on - strand, within Psest_1329 at 1432.152 kb on - strand, within Psest_1329 at 1432.152 kb on - strand, within Psest_1329 at 1432.217 kb on + strand, within Psest_1329 at 1432.477 kb on - strand, within Psest_1329 at 1432.477 kb on - strand, within Psest_1329 at 1432.477 kb on - strand, within Psest_1329 at 1432.799 kb on + strand at 1432.800 kb on - strand at 1432.800 kb on - strand at 1432.823 kb on + strand at 1432.824 kb on - strand at 1432.824 kb on - strand at 1432.867 kb on + strand at 1432.867 kb on + strand at 1432.867 kb on + strand at 1432.867 kb on + strand at 1432.870 kb on - strand at 1433.007 kb on + strand at 1433.027 kb on - strand, within Psest_1331 at 1433.159 kb on - strand at 1433.695 kb on - strand, within Psest_1332 at 1433.733 kb on + strand, within Psest_1332 at 1433.733 kb on + strand, within Psest_1332 at 1433.733 kb on + strand, within Psest_1332
Per-strain Table
Position Strand Gene LocusTag Fraction Def Chloride 400 mM remove 1,431,639 - +1.7 1,431,639 - -3.1 1,431,682 + +0.2 1,431,685 - -0.3 1,431,685 - +0.0 1,431,726 - +0.3 1,431,726 - +0.5 1,432,151 + Psest_1329 0.25 -2.7 1,432,151 + Psest_1329 0.25 -1.0 1,432,151 + Psest_1329 0.25 +0.8 1,432,151 + Psest_1329 0.25 -0.8 1,432,152 - Psest_1329 0.25 -1.2 1,432,152 - Psest_1329 0.25 -0.6 1,432,152 - Psest_1329 0.25 +0.3 1,432,152 - Psest_1329 0.25 -2.1 1,432,152 - Psest_1329 0.25 -1.2 1,432,152 - Psest_1329 0.25 -0.1 1,432,152 - Psest_1329 0.25 -0.2 1,432,152 - Psest_1329 0.25 +0.6 1,432,152 - Psest_1329 0.25 +0.1 1,432,217 + Psest_1329 0.35 -0.7 1,432,477 - Psest_1329 0.78 -0.2 1,432,477 - Psest_1329 0.78 -0.1 1,432,477 - Psest_1329 0.78 +0.5 1,432,799 + -0.5 1,432,800 - -2.1 1,432,800 - -0.1 1,432,823 + +0.8 1,432,824 - -0.6 1,432,824 - -0.3 1,432,867 + -0.8 1,432,867 + -1.0 1,432,867 + -0.4 1,432,867 + -0.1 1,432,870 - +0.2 1,433,007 + +0.1 1,433,027 - Psest_1331 0.11 -0.6 1,433,159 - -0.3 1,433,695 - Psest_1332 0.16 -1.2 1,433,733 + Psest_1332 0.17 -0.6 1,433,733 + Psest_1332 0.17 -0.9 1,433,733 + Psest_1332 0.17 -0.6
Or see this region's nucleotide sequence