Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1330

Experiment: Def Chloride 400 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1328 and Psest_1329 are separated by 1 nucleotidesPsest_1329 and Psest_1330 overlap by 4 nucleotidesPsest_1330 and Psest_1331 are separated by 241 nucleotidesPsest_1331 and Psest_1332 are separated by 69 nucleotides Psest_1328: Psest_1328 - hypothetical protein, at 1,431,700 to 1,431,996 _1328 Psest_1329: Psest_1329 - Alkylated DNA repair protein, at 1,431,998 to 1,432,615 _1329 Psest_1330: Psest_1330 - hypothetical protein, at 1,432,612 to 1,432,773 _1330 Psest_1331: Psest_1331 - hypothetical protein, at 1,433,015 to 1,433,125 _1331 Psest_1332: Psest_1332 - alpha-1,6-glucosidases, pullulanase-type, at 1,433,195 to 1,436,314 _1332 Position (kb) 1432 1433Strain fitness (log2 ratio) -3 -2 -1 0 1at 1431.639 kb on - strandat 1431.639 kb on - strandat 1431.682 kb on + strandat 1431.685 kb on - strandat 1431.685 kb on - strandat 1431.726 kb on - strandat 1431.726 kb on - strandat 1432.151 kb on + strand, within Psest_1329at 1432.151 kb on + strand, within Psest_1329at 1432.151 kb on + strand, within Psest_1329at 1432.151 kb on + strand, within Psest_1329at 1432.152 kb on - strand, within Psest_1329at 1432.152 kb on - strand, within Psest_1329at 1432.152 kb on - strand, within Psest_1329at 1432.152 kb on - strand, within Psest_1329at 1432.152 kb on - strand, within Psest_1329at 1432.152 kb on - strand, within Psest_1329at 1432.152 kb on - strand, within Psest_1329at 1432.152 kb on - strand, within Psest_1329at 1432.152 kb on - strand, within Psest_1329at 1432.217 kb on + strand, within Psest_1329at 1432.477 kb on - strand, within Psest_1329at 1432.477 kb on - strand, within Psest_1329at 1432.477 kb on - strand, within Psest_1329at 1432.799 kb on + strandat 1432.800 kb on - strandat 1432.800 kb on - strandat 1432.823 kb on + strandat 1432.824 kb on - strandat 1432.824 kb on - strandat 1432.867 kb on + strandat 1432.867 kb on + strandat 1432.867 kb on + strandat 1432.867 kb on + strandat 1432.870 kb on - strandat 1433.007 kb on + strandat 1433.027 kb on - strand, within Psest_1331at 1433.159 kb on - strandat 1433.695 kb on - strand, within Psest_1332at 1433.733 kb on + strand, within Psest_1332at 1433.733 kb on + strand, within Psest_1332at 1433.733 kb on + strand, within Psest_1332

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Chloride 400 mM
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1,431,639 - +1.7
1,431,639 - -3.1
1,431,682 + +0.2
1,431,685 - -0.3
1,431,685 - +0.0
1,431,726 - +0.3
1,431,726 - +0.5
1,432,151 + Psest_1329 0.25 -2.7
1,432,151 + Psest_1329 0.25 -1.0
1,432,151 + Psest_1329 0.25 +0.8
1,432,151 + Psest_1329 0.25 -0.8
1,432,152 - Psest_1329 0.25 -1.2
1,432,152 - Psest_1329 0.25 -0.6
1,432,152 - Psest_1329 0.25 +0.3
1,432,152 - Psest_1329 0.25 -2.1
1,432,152 - Psest_1329 0.25 -1.2
1,432,152 - Psest_1329 0.25 -0.1
1,432,152 - Psest_1329 0.25 -0.2
1,432,152 - Psest_1329 0.25 +0.6
1,432,152 - Psest_1329 0.25 +0.1
1,432,217 + Psest_1329 0.35 -0.7
1,432,477 - Psest_1329 0.78 -0.2
1,432,477 - Psest_1329 0.78 -0.1
1,432,477 - Psest_1329 0.78 +0.5
1,432,799 + -0.5
1,432,800 - -2.1
1,432,800 - -0.1
1,432,823 + +0.8
1,432,824 - -0.6
1,432,824 - -0.3
1,432,867 + -0.8
1,432,867 + -1.0
1,432,867 + -0.4
1,432,867 + -0.1
1,432,870 - +0.2
1,433,007 + +0.1
1,433,027 - Psest_1331 0.11 -0.6
1,433,159 - -0.3
1,433,695 - Psest_1332 0.16 -1.2
1,433,733 + Psest_1332 0.17 -0.6
1,433,733 + Psest_1332 0.17 -0.9
1,433,733 + Psest_1332 0.17 -0.6

Or see this region's nucleotide sequence