Experiment: Def Chloride 400 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0125 and Psest_0126 are separated by 11 nucleotides Psest_0126 and Psest_0127 overlap by 37 nucleotides
Psest_0125: Psest_0125 - type VI secretion ATPase, ClpV1 family, at 122,036 to 124,627
_0125
Psest_0126: Psest_0126 - type VI secretion protein, VC_A0111 family, at 124,639 to 125,646
_0126
Psest_0127: Psest_0127 - type VI secretion protein, VC_A0110 family, at 125,610 to 127,400
_0127
Position (kb) 124
125
126 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 123.648 kb on + strand, within Psest_0125 at 123.648 kb on + strand, within Psest_0125 at 123.657 kb on + strand, within Psest_0125 at 123.657 kb on + strand, within Psest_0125 at 123.657 kb on + strand, within Psest_0125 at 123.658 kb on - strand, within Psest_0125 at 123.658 kb on - strand, within Psest_0125 at 124.254 kb on + strand, within Psest_0125 at 124.254 kb on + strand, within Psest_0125 at 124.598 kb on + strand at 124.599 kb on - strand at 125.048 kb on + strand, within Psest_0126 at 125.048 kb on + strand, within Psest_0126 at 125.048 kb on + strand, within Psest_0126 at 125.048 kb on + strand, within Psest_0126 at 125.049 kb on - strand, within Psest_0126 at 125.049 kb on - strand, within Psest_0126 at 125.049 kb on - strand, within Psest_0126 at 125.049 kb on - strand, within Psest_0126 at 125.052 kb on - strand, within Psest_0126 at 125.111 kb on + strand, within Psest_0126 at 125.112 kb on - strand, within Psest_0126 at 125.240 kb on + strand, within Psest_0126 at 125.348 kb on + strand, within Psest_0126 at 125.348 kb on + strand, within Psest_0126 at 125.348 kb on + strand, within Psest_0126 at 125.349 kb on - strand, within Psest_0126 at 125.349 kb on - strand, within Psest_0126 at 125.349 kb on - strand, within Psest_0126 at 125.349 kb on - strand, within Psest_0126 at 125.349 kb on - strand, within Psest_0126 at 125.582 kb on + strand at 125.583 kb on - strand at 125.650 kb on + strand at 125.650 kb on + strand at 125.650 kb on + strand at 125.651 kb on - strand at 125.689 kb on + strand at 125.707 kb on + strand at 125.799 kb on + strand, within Psest_0127 at 125.905 kb on + strand, within Psest_0127 at 125.905 kb on + strand, within Psest_0127 at 125.905 kb on + strand, within Psest_0127 at 125.905 kb on + strand, within Psest_0127 at 125.906 kb on - strand, within Psest_0127 at 125.923 kb on + strand, within Psest_0127 at 125.923 kb on + strand, within Psest_0127 at 125.923 kb on + strand, within Psest_0127 at 125.923 kb on + strand, within Psest_0127 at 125.924 kb on - strand, within Psest_0127 at 125.924 kb on - strand, within Psest_0127 at 125.924 kb on - strand, within Psest_0127 at 125.924 kb on - strand, within Psest_0127 at 125.924 kb on - strand, within Psest_0127 at 125.971 kb on + strand, within Psest_0127 at 125.971 kb on + strand, within Psest_0127 at 125.971 kb on + strand, within Psest_0127 at 125.971 kb on + strand, within Psest_0127 at 125.971 kb on + strand, within Psest_0127 at 125.971 kb on + strand, within Psest_0127 at 125.972 kb on - strand, within Psest_0127 at 125.972 kb on - strand, within Psest_0127 at 125.972 kb on - strand, within Psest_0127 at 125.972 kb on - strand, within Psest_0127 at 125.972 kb on - strand, within Psest_0127 at 126.007 kb on + strand, within Psest_0127 at 126.008 kb on - strand, within Psest_0127 at 126.008 kb on - strand, within Psest_0127 at 126.032 kb on - strand, within Psest_0127 at 126.250 kb on + strand, within Psest_0127 at 126.251 kb on - strand, within Psest_0127 at 126.313 kb on + strand, within Psest_0127 at 126.314 kb on - strand, within Psest_0127 at 126.314 kb on - strand, within Psest_0127 at 126.391 kb on + strand, within Psest_0127 at 126.391 kb on + strand, within Psest_0127 at 126.391 kb on + strand, within Psest_0127 at 126.391 kb on + strand, within Psest_0127 at 126.391 kb on + strand, within Psest_0127 at 126.392 kb on - strand, within Psest_0127 at 126.392 kb on - strand, within Psest_0127 at 126.392 kb on - strand, within Psest_0127 at 126.392 kb on - strand, within Psest_0127 at 126.406 kb on - strand, within Psest_0127 at 126.412 kb on + strand, within Psest_0127 at 126.412 kb on + strand, within Psest_0127 at 126.413 kb on - strand, within Psest_0127 at 126.513 kb on + strand, within Psest_0127 at 126.513 kb on + strand, within Psest_0127 at 126.513 kb on + strand, within Psest_0127 at 126.513 kb on + strand, within Psest_0127 at 126.514 kb on - strand, within Psest_0127 at 126.514 kb on - strand, within Psest_0127 at 126.514 kb on - strand, within Psest_0127 at 126.514 kb on - strand, within Psest_0127 at 126.514 kb on - strand, within Psest_0127
Per-strain Table
Position Strand Gene LocusTag Fraction Def Chloride 400 mM remove 123,648 + Psest_0125 0.62 +0.3 123,648 + Psest_0125 0.62 +1.3 123,657 + Psest_0125 0.63 -0.9 123,657 + Psest_0125 0.63 -1.1 123,657 + Psest_0125 0.63 +0.6 123,658 - Psest_0125 0.63 +1.5 123,658 - Psest_0125 0.63 +0.2 124,254 + Psest_0125 0.86 -0.0 124,254 + Psest_0125 0.86 +0.7 124,598 + +0.1 124,599 - +0.9 125,048 + Psest_0126 0.41 -0.7 125,048 + Psest_0126 0.41 -2.9 125,048 + Psest_0126 0.41 +1.2 125,048 + Psest_0126 0.41 -0.1 125,049 - Psest_0126 0.41 +0.5 125,049 - Psest_0126 0.41 +2.5 125,049 - Psest_0126 0.41 +0.7 125,049 - Psest_0126 0.41 +0.7 125,052 - Psest_0126 0.41 -1.2 125,111 + Psest_0126 0.47 +0.4 125,112 - Psest_0126 0.47 +0.5 125,240 + Psest_0126 0.60 -1.1 125,348 + Psest_0126 0.70 +2.4 125,348 + Psest_0126 0.70 +1.2 125,348 + Psest_0126 0.70 -0.9 125,349 - Psest_0126 0.70 +0.1 125,349 - Psest_0126 0.70 +0.6 125,349 - Psest_0126 0.70 +0.1 125,349 - Psest_0126 0.70 +0.3 125,349 - Psest_0126 0.70 +2.0 125,582 + -1.1 125,583 - -0.4 125,650 + +0.2 125,650 + +2.5 125,650 + +2.0 125,651 - +0.4 125,689 + -0.4 125,707 + -0.9 125,799 + Psest_0127 0.11 +1.3 125,905 + Psest_0127 0.16 +0.4 125,905 + Psest_0127 0.16 +0.7 125,905 + Psest_0127 0.16 -1.3 125,905 + Psest_0127 0.16 +1.2 125,906 - Psest_0127 0.17 -0.3 125,923 + Psest_0127 0.17 +0.8 125,923 + Psest_0127 0.17 +1.5 125,923 + Psest_0127 0.17 -0.3 125,923 + Psest_0127 0.17 -1.6 125,924 - Psest_0127 0.18 +1.1 125,924 - Psest_0127 0.18 -0.6 125,924 - Psest_0127 0.18 -0.1 125,924 - Psest_0127 0.18 -0.3 125,924 - Psest_0127 0.18 -0.2 125,971 + Psest_0127 0.20 +1.2 125,971 + Psest_0127 0.20 -0.1 125,971 + Psest_0127 0.20 -2.4 125,971 + Psest_0127 0.20 +0.0 125,971 + Psest_0127 0.20 +0.5 125,971 + Psest_0127 0.20 -2.0 125,972 - Psest_0127 0.20 +1.6 125,972 - Psest_0127 0.20 -0.1 125,972 - Psest_0127 0.20 -0.3 125,972 - Psest_0127 0.20 +0.2 125,972 - Psest_0127 0.20 -0.6 126,007 + Psest_0127 0.22 -0.2 126,008 - Psest_0127 0.22 -0.1 126,008 - Psest_0127 0.22 -0.1 126,032 - Psest_0127 0.24 +0.2 126,250 + Psest_0127 0.36 -0.9 126,251 - Psest_0127 0.36 +1.0 126,313 + Psest_0127 0.39 +0.4 126,314 - Psest_0127 0.39 -0.6 126,314 - Psest_0127 0.39 +0.2 126,391 + Psest_0127 0.44 -2.3 126,391 + Psest_0127 0.44 -0.6 126,391 + Psest_0127 0.44 +2.4 126,391 + Psest_0127 0.44 +0.2 126,391 + Psest_0127 0.44 +0.1 126,392 - Psest_0127 0.44 -0.5 126,392 - Psest_0127 0.44 -1.2 126,392 - Psest_0127 0.44 +0.2 126,392 - Psest_0127 0.44 +0.1 126,406 - Psest_0127 0.44 +0.3 126,412 + Psest_0127 0.45 -0.4 126,412 + Psest_0127 0.45 +0.1 126,413 - Psest_0127 0.45 +1.5 126,513 + Psest_0127 0.50 -0.3 126,513 + Psest_0127 0.50 +1.9 126,513 + Psest_0127 0.50 -0.1 126,513 + Psest_0127 0.50 +0.3 126,514 - Psest_0127 0.50 -0.5 126,514 - Psest_0127 0.50 +0.2 126,514 - Psest_0127 0.50 +1.1 126,514 - Psest_0127 0.50 -1.9 126,514 - Psest_0127 0.50 -1.1
Or see this region's nucleotide sequence