Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1105

Experiment: Def Chloride 400 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1103 and Psest_1104 are separated by 25 nucleotidesPsest_1104 and Psest_1105 are separated by 33 nucleotidesPsest_1105 and Psest_1106 are separated by 119 nucleotides Psest_1103: Psest_1103 - GTP-binding protein YchF, at 1,199,411 to 1,200,511 _1103 Psest_1104: Psest_1104 - peptidyl-tRNA hydrolase, at 1,200,537 to 1,201,121 _1104 Psest_1105: Psest_1105 - ribosomal protein L25, Ctc-form, at 1,201,155 to 1,201,772 _1105 Psest_1106: Psest_1106 - ribose-phosphate pyrophosphokinase, at 1,201,892 to 1,202,881 _1106 Position (kb) 1201 1202Strain fitness (log2 ratio) -1 0 1at 1200.532 kb on - strandat 1200.532 kb on - strandat 1200.532 kb on - strandat 1201.863 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Chloride 400 mM
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1,200,532 - +1.0
1,200,532 - +0.7
1,200,532 - -0.6
1,201,863 - -0.9

Or see this region's nucleotide sequence