Experiment: Glycine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0757 and SO0758 are separated by 129 nucleotides SO0758 and amt are separated by 109 nucleotides amt and glnB-1 are separated by 34 nucleotides glnB-1 and SO0762 are separated by 308 nucleotides
SO0757: SO0757 - TPR domain protein (NCBI ptt file), at 773,234 to 774,421
SO0757
SO0758: SO0758 - hypothetical protein (NCBI ptt file), at 774,551 to 774,898
SO0758
SO0760: amt - ammonium transporter (NCBI ptt file), at 775,008 to 776,234
amt
SO0761: glnB-1 - nitrogen regulatory protein P-II 1 (NCBI ptt file), at 776,269 to 776,607
glnB-1
SO0762: SO0762 - isochorismatase family protein (NCBI ptt file), at 776,916 to 777,458
SO0762
Position (kb) 775
776
777 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 774.030 kb on + strand, within SO0757 at 774.053 kb on + strand, within SO0757 at 774.053 kb on + strand, within SO0757 at 774.061 kb on - strand, within SO0757 at 774.153 kb on - strand, within SO0757 at 774.172 kb on - strand, within SO0757 at 774.240 kb on - strand, within SO0757 at 774.240 kb on - strand, within SO0757 at 774.245 kb on - strand, within SO0757 at 774.245 kb on - strand, within SO0757 at 774.245 kb on - strand, within SO0757 at 774.245 kb on - strand, within SO0757 at 774.371 kb on + strand at 774.430 kb on + strand at 774.437 kb on + strand at 774.548 kb on + strand at 774.556 kb on - strand at 774.680 kb on + strand, within SO0758 at 774.688 kb on - strand, within SO0758 at 774.688 kb on - strand, within SO0758 at 774.700 kb on + strand, within SO0758 at 774.706 kb on - strand, within SO0758 at 774.880 kb on + strand at 774.885 kb on + strand at 774.893 kb on - strand at 774.894 kb on - strand at 774.951 kb on + strand at 775.025 kb on - strand at 775.076 kb on - strand at 775.230 kb on + strand, within amt at 775.310 kb on + strand, within amt at 775.322 kb on + strand, within amt at 775.330 kb on - strand, within amt at 775.501 kb on + strand, within amt at 775.512 kb on + strand, within amt at 775.659 kb on + strand, within amt at 775.671 kb on + strand, within amt at 775.744 kb on - strand, within amt at 775.794 kb on - strand, within amt at 775.807 kb on + strand, within amt at 775.875 kb on + strand, within amt at 776.019 kb on - strand, within amt at 776.124 kb on + strand at 776.124 kb on + strand at 776.124 kb on + strand at 776.158 kb on + strand at 776.214 kb on + strand at 776.275 kb on - strand at 776.282 kb on + strand at 776.290 kb on - strand at 776.316 kb on + strand, within glnB-1 at 776.380 kb on - strand, within glnB-1 at 776.462 kb on + strand, within glnB-1 at 776.483 kb on - strand, within glnB-1 at 776.504 kb on + strand, within glnB-1 at 776.527 kb on + strand, within glnB-1 at 776.599 kb on - strand at 776.614 kb on - strand at 776.788 kb on - strand at 776.915 kb on - strand at 776.940 kb on - strand at 776.984 kb on - strand, within SO0762 at 777.028 kb on - strand, within SO0762 at 777.030 kb on + strand, within SO0762 at 777.053 kb on + strand, within SO0762 at 777.063 kb on + strand, within SO0762 at 777.156 kb on + strand, within SO0762 at 777.174 kb on - strand, within SO0762
Per-strain Table
Position Strand Gene LocusTag Fraction Glycine (N) remove 774,030 + SO0757 0.67 -0.2 774,053 + SO0757 0.69 -0.3 774,053 + SO0757 0.69 -0.1 774,061 - SO0757 0.70 -0.1 774,153 - SO0757 0.77 +1.3 774,172 - SO0757 0.79 +1.0 774,240 - SO0757 0.85 +0.8 774,240 - SO0757 0.85 -0.2 774,245 - SO0757 0.85 -0.0 774,245 - SO0757 0.85 +0.3 774,245 - SO0757 0.85 +0.8 774,245 - SO0757 0.85 -0.0 774,371 + +0.2 774,430 + -0.7 774,437 + -0.1 774,548 + +0.1 774,556 - -0.6 774,680 + SO0758 0.37 -0.1 774,688 - SO0758 0.39 +1.9 774,688 - SO0758 0.39 +1.1 774,700 + SO0758 0.43 -0.6 774,706 - SO0758 0.45 -0.4 774,880 + +1.6 774,885 + -0.5 774,893 - +0.0 774,894 - +1.1 774,951 + -0.2 775,025 - -1.8 775,076 - -2.2 775,230 + amt SO0760 0.18 -0.7 775,310 + amt SO0760 0.25 -2.3 775,322 + amt SO0760 0.26 -3.8 775,330 - amt SO0760 0.26 -3.2 775,501 + amt SO0760 0.40 -2.6 775,512 + amt SO0760 0.41 -3.6 775,659 + amt SO0760 0.53 -2.2 775,671 + amt SO0760 0.54 -0.9 775,744 - amt SO0760 0.60 -1.1 775,794 - amt SO0760 0.64 -2.3 775,807 + amt SO0760 0.65 -1.6 775,875 + amt SO0760 0.71 -1.2 776,019 - amt SO0760 0.82 -1.6 776,124 + -1.9 776,124 + -1.0 776,124 + -1.8 776,158 + -1.6 776,214 + -3.9 776,275 - -1.9 776,282 + -2.2 776,290 - -1.2 776,316 + glnB-1 SO0761 0.14 -1.5 776,380 - glnB-1 SO0761 0.33 -2.2 776,462 + glnB-1 SO0761 0.57 -3.6 776,483 - glnB-1 SO0761 0.63 -1.6 776,504 + glnB-1 SO0761 0.69 -1.9 776,527 + glnB-1 SO0761 0.76 -2.4 776,599 - -1.8 776,614 - -0.5 776,788 - +1.2 776,915 - +0.2 776,940 - +0.0 776,984 - SO0762 0.13 -0.4 777,028 - SO0762 0.21 +0.3 777,030 + SO0762 0.21 +0.0 777,053 + SO0762 0.25 +0.4 777,063 + SO0762 0.27 +0.4 777,156 + SO0762 0.44 +0.7 777,174 - SO0762 0.48 +0.2
Or see this region's nucleotide sequence