Strain Fitness in Shewanella oneidensis MR-1 around SO2121

Experiment: L-Asparagine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Asparagine (N)
2,224,498	-		SO2119	0.69	+0.3
2,224,498	-		SO2119	0.69	+0.6
2,224,503	+		SO2119	0.69	+0.8
2,224,505	-		SO2119	0.69	+0.3
2,224,510	+		SO2119	0.69	-0.3
2,224,547	+		SO2119	0.72	-0.1
2,224,555	-		SO2119	0.72	-1.2
2,224,586	+		SO2119	0.74	+0.2
2,224,591	+		SO2119	0.74	+0.8
2,224,633	-		SO2119	0.77	-0.3
2,224,635	+		SO2119	0.77	+0.1
2,224,643	-		SO2119	0.77	-0.2
2,224,645	+		SO2119	0.77	+0.1
2,224,645	+		SO2119	0.77	-0.2
2,224,691	+		SO2119	0.80	+1.2
2,224,693	+		SO2119	0.80	-0.0
2,224,693	+		SO2119	0.80	-1.6
2,224,701	-		SO2119	0.81	+1.2
2,224,718	+		SO2119	0.82	-0.4
2,224,718	+		SO2119	0.82	-1.1
2,224,718	+		SO2119	0.82	+0.5
2,224,718	+		SO2119	0.82	-0.8
2,224,718	+		SO2119	0.82	-0.4
2,224,718	+		SO2119	0.82	+0.4
2,224,718	+		SO2119	0.82	+0.2
2,224,718	+		SO2119	0.82	+0.2
2,224,718	+		SO2119	0.82	+0.3
2,224,718	+		SO2119	0.82	+0.4
2,224,718	+		SO2119	0.82	-0.5
2,224,718	+		SO2119	0.82	+0.2
2,224,718	+		SO2119	0.82	+0.7
2,224,718	+		SO2119	0.82	-0.1
2,224,718	+		SO2119	0.82	-0.3
2,224,718	+		SO2119	0.82	-0.0
2,224,718	+		SO2119	0.82	-0.0
2,224,718	+		SO2119	0.82	-2.9
2,224,718	+		SO2119	0.82	-0.5
2,224,718	+		SO2119	0.82	+0.6
2,224,718	+		SO2119	0.82	-0.2
2,224,724	-		SO2119	0.82	-1.3
2,224,726	-		SO2119	0.82	+0.7
2,224,726	-		SO2119	0.82	-1.3
2,224,726	-		SO2119	0.82	+0.7
2,224,726	-		SO2119	0.82	-0.1
2,224,726	-		SO2119	0.82	+0.7
2,224,726	-		SO2119	0.82	+1.1
2,224,726	-		SO2119	0.82	+0.5
2,224,726	-		SO2119	0.82	+0.4
2,224,726	-		SO2119	0.82	+0.2
2,224,728	+		SO2119	0.82	-0.7
2,224,736	-		SO2119	0.83	-0.3
2,224,765	+		SO2119	0.84	+0.3
2,224,766	+		SO2119	0.85	-0.5
2,224,766	+		SO2119	0.85	-0.7
2,224,774	-		SO2119	0.85	+0.5
2,224,776	+		SO2119	0.85	-0.6
2,224,782	+		SO2119	0.85	-0.6
2,224,784	+		SO2119	0.86	-0.1
2,224,784	+		SO2119	0.86	+0.9
2,224,784	+		SO2119	0.86	+0.7
2,224,784	+		SO2119	0.86	+0.3
2,224,784	+		SO2119	0.86	+0.6
2,224,784	+		SO2119	0.86	+0.3
2,224,784	+		SO2119	0.86	+0.8
2,224,784	+		SO2119	0.86	-0.4
2,224,784	+		SO2119	0.86	+0.2
2,224,784	+		SO2119	0.86	-0.5
2,224,784	+		SO2119	0.86	-1.1
2,224,784	+		SO2119	0.86	+0.3
2,224,784	+		SO2119	0.86	-0.2
2,224,784	-		SO2119	0.86	+1.2
2,224,784	-		SO2119	0.86	+0.7
2,224,792	-		SO2119	0.86	+0.1
2,224,792	-		SO2119	0.86	+0.2
2,224,792	-		SO2119	0.86	-0.4
2,224,792	-		SO2119	0.86	+0.4
2,224,792	-		SO2119	0.86	+0.3
2,224,792	-		SO2119	0.86	-0.7
2,224,792	-		SO2119	0.86	+0.3
2,224,792	-		SO2119	0.86	+0.8
2,224,792	-		SO2119	0.86	-0.8
2,224,792	-		SO2119	0.86	+0.9
2,224,792	-		SO2119	0.86	+0.5
2,224,794	+		SO2119	0.86	-0.6
2,224,794	+		SO2119	0.86	+1.3
2,224,796	+		SO2119	0.86	+1.0
2,224,796	+		SO2119	0.86	+0.1
2,224,796	+		SO2119	0.86	+0.3
2,224,796	+		SO2119	0.86	-1.5
2,224,802	-		SO2119	0.87	+0.0
2,224,804	-		SO2119	0.87	+1.3
2,224,804	-		SO2119	0.87	+0.7
2,224,804	-		SO2119	0.87	-0.4
2,224,804	-		SO2119	0.87	+0.8
2,224,804	-		SO2119	0.87	-0.5
2,224,804	-		SO2119	0.87	+0.4
2,224,809	+		SO2119	0.87	+0.1
2,224,814	+		SO2119	0.87	+0.0
2,224,814	-		SO2119	0.87	+1.2
2,224,814	-		SO2119	0.87	+0.4
2,224,817	-		SO2119	0.88	+0.3
2,224,817	-		SO2119	0.88	+0.5
2,224,826	+		SO2119	0.88	+0.3
2,224,826	+		SO2119	0.88	+0.3
2,224,826	+		SO2119	0.88	+0.4
2,224,826	+		SO2119	0.88	-0.7
2,224,834	-		SO2119	0.89	-0.2
2,224,834	-		SO2119	0.89	-1.4
2,224,843	+		SO2119	0.89	-0.6
2,224,843	+		SO2119	0.89	-0.1
2,224,843	+		SO2119	0.89	+0.2
2,224,843	+		SO2119	0.89	+1.0
2,224,843	+		SO2119	0.89	-0.2
2,224,843	+		SO2119	0.89	+0.1
2,224,843	+		SO2119	0.89	-0.5
2,224,843	+		SO2119	0.89	-0.1
2,224,843	+		SO2119	0.89	+1.3
2,224,843	+		SO2119	0.89	-0.1
2,224,843	+		SO2119	0.89	+0.4
2,224,843	+		SO2119	0.89	-0.8
2,224,843	+		SO2119	0.89	+0.5
2,224,843	+		SO2119	0.89	+0.0
2,224,843	+		SO2119	0.89	-0.6
2,224,843	+		SO2119	0.89	-0.3
2,224,843	+		SO2119	0.89	+0.1
2,224,843	+		SO2119	0.89	+0.0
2,224,843	+		SO2119	0.89	+1.1
2,224,843	+		SO2119	0.89	+1.0
2,224,843	+		SO2119	0.89	+0.2
2,224,843	+		SO2119	0.89	+0.9
2,224,843	+		SO2119	0.89	+1.1
2,224,843	+		SO2119	0.89	+0.2
2,224,843	+		SO2119	0.89	+0.1
2,224,843	+		SO2119	0.89	-3.2
2,224,843	+		SO2119	0.89	-0.0
2,224,843	+		SO2119	0.89	-0.5
2,224,843	+		SO2119	0.89	+0.5
2,224,843	+		SO2119	0.89	-0.3
2,224,843	+		SO2119	0.89	-0.3
2,224,843	+		SO2119	0.89	-0.2
2,224,843	+		SO2119	0.89	+1.7
2,224,843	+		SO2119	0.89	-0.2
2,224,843	+		SO2119	0.89	+1.4
2,224,843	+		SO2119	0.89	-0.3
2,224,843	+		SO2119	0.89	+0.9
2,224,843	+		SO2119	0.89	-0.6
2,224,843	+		SO2119	0.89	-0.3
2,224,843	+		SO2119	0.89	+0.7
2,224,843	+		SO2119	0.89	-0.1
2,224,843	+		SO2119	0.89	-0.2
2,224,843	+		SO2119	0.89	-0.3
2,224,843	+		SO2119	0.89	+0.9
2,224,843	+		SO2119	0.89	-0.3
2,224,843	+		SO2119	0.89	-0.0
2,224,843	+		SO2119	0.89	-0.1
2,224,843	+		SO2119	0.89	+0.2
2,224,843	+		SO2119	0.89	+0.7
2,224,843	+		SO2119	0.89	+0.6
2,224,844	+		SO2119	0.89	+0.6
2,224,844	+		SO2119	0.89	+0.6
2,224,844	-		SO2119	0.89	+0.0
2,224,851	+		SO2119	0.90	+1.5
2,224,851	-		SO2119	0.90	+0.0
2,224,851	-		SO2119	0.90	+0.2
2,224,851	-		SO2119	0.90	+1.1
2,224,851	-		SO2119	0.90	+0.0
2,224,851	-		SO2119	0.90	+0.4
2,224,851	-		SO2119	0.90	-0.7
2,224,851	-		SO2119	0.90	+0.4
2,224,851	-		SO2119	0.90	-0.0
2,224,851	-		SO2119	0.90	+1.0
2,224,851	-		SO2119	0.90	+1.0
2,224,851	-		SO2119	0.90	+0.3
2,224,851	-		SO2119	0.90	-0.6
2,224,851	-		SO2119	0.90	+0.7
2,224,851	-		SO2119	0.90	+0.7
2,224,851	-		SO2119	0.90	-0.2
2,224,851	-		SO2119	0.90	+0.8
2,224,851	-		SO2119	0.90	-0.1
2,224,851	-		SO2119	0.90	+0.4
2,224,851	-		SO2119	0.90	+0.4
2,224,851	-		SO2119	0.90	+1.4
2,224,851	-		SO2119	0.90	+0.1
2,224,851	-		SO2119	0.90	+1.0
2,224,851	-		SO2119	0.90	+0.8
2,224,851	-		SO2119	0.90	+0.4
2,224,851	-		SO2119	0.90	-0.0
2,224,851	-		SO2119	0.90	+1.3
2,224,851	-		SO2119	0.90	+0.3
2,224,851	-		SO2119	0.90	-0.1
2,224,851	-		SO2119	0.90	-1.4
2,224,851	-		SO2119	0.90	+0.2
2,224,851	-		SO2119	0.90	+0.9
2,224,851	-		SO2119	0.90	-0.2
2,224,851	-		SO2119	0.90	+0.2
2,224,851	-		SO2119	0.90	-0.3
2,224,851	-		SO2119	0.90	-0.8
2,224,851	-		SO2119	0.90	+0.6
2,224,851	-		SO2119	0.90	-0.8
2,224,851	-		SO2119	0.90	+0.7
2,224,851	-		SO2119	0.90	+0.7
2,224,851	-		SO2119	0.90	+0.5
2,224,851	-		SO2119	0.90	-0.2
2,224,851	-		SO2119	0.90	-0.5
2,224,851	-		SO2119	0.90	-0.7
2,224,852	-		SO2119	0.90	+0.1
2,224,853	+		SO2119	0.90	+0.4
2,224,853	+		SO2119	0.90	+0.4
2,224,853	+		SO2119	0.90	+0.7
2,224,861	-				-0.5
2,224,861	-				-0.3
2,224,866	+				+0.4
2,224,866	+				-0.1
2,224,866	+				+0.1
2,224,866	+				+0.4
2,224,866	+				-0.2
2,224,874	-				+0.7
2,224,874	-				-0.1
2,224,874	-				+0.9
2,224,876	+				+0.4
2,224,876	+				-0.4
2,224,876	+				+0.4
2,224,878	+				+0.4
2,224,884	-				-1.3
2,224,884	-				+1.0
2,224,888	+				-1.0
2,224,894	-				+0.3
2,224,896	-				-0.2
2,224,902	-				+0.0
2,224,909	+				-0.2
2,224,909	+				+0.1
2,224,923	+				-0.5
2,224,928	+				-0.6
2,224,928	+				-0.5
2,224,928	+				-0.4
2,224,928	+				+0.6
2,224,928	+				-0.2
2,224,928	+				+0.5
2,224,928	+				-0.3
2,224,928	+				+0.6
2,224,931	-				-0.1
2,224,931	-				-0.1
2,224,936	-				+0.1
2,224,936	-				-0.1
2,224,936	-				+0.5
2,224,936	-				-0.2
2,224,942	+				-0.1
2,224,942	+				-0.5
2,224,942	+				-0.7
2,224,947	+				-0.6
2,224,947	+				+0.7
2,224,947	+				-0.1
2,224,947	+				+1.0
2,224,948	+				+1.3
2,224,948	+				+0.2
2,224,949	+				+0.4
2,224,949	+				-1.0
2,224,949	+				+0.6
2,224,949	+				+0.1
2,224,949	+				+0.2
2,224,949	+				-0.1
2,224,949	+				-0.3
2,224,949	+				-0.3
2,224,950	-				+0.0
2,224,955	-				-0.5
2,224,955	-				+1.3
2,224,955	-				+0.4
2,224,955	-				+0.3
2,224,955	-				+0.5
2,224,957	-				+0.2
2,224,957	-				+0.9
2,224,959	+				+1.0
2,224,959	+				+0.1
2,224,959	+				-0.3
2,224,959	+				-0.3
2,224,959	+				-0.3
2,224,967	+				-0.6
2,224,973	-				+0.7
2,225,004	+				+1.0
2,225,023	+				-0.0
2,225,065	+				+0.0
2,225,068	+				+0.0
2,225,082	+	cheY-1	SO2120	0.14	-0.0
2,225,082	+	cheY-1	SO2120	0.14	+0.9
2,225,083	+	cheY-1	SO2120	0.14	+1.0
2,225,090	-	cheY-1	SO2120	0.16	-0.4
2,225,091	-	cheY-1	SO2120	0.16	+0.6
2,225,091	-	cheY-1	SO2120	0.16	+0.9
2,225,091	-	cheY-1	SO2120	0.16	+0.3
2,225,101	-	cheY-1	SO2120	0.19	+0.9
2,225,102	-	cheY-1	SO2120	0.19	+0.5
2,225,143	+	cheY-1	SO2120	0.30	+0.5
2,225,143	+	cheY-1	SO2120	0.30	-0.2
2,225,151	-	cheY-1	SO2120	0.33	-0.1
2,225,213	+	cheY-1	SO2120	0.49	+1.2
2,225,218	+	cheY-1	SO2120	0.51	+0.1
2,225,221	-	cheY-1	SO2120	0.52	-0.2
2,225,287	-	cheY-1	SO2120	0.70	-0.7
2,225,310	+	cheY-1	SO2120	0.76	+0.8
2,225,310	+	cheY-1	SO2120	0.76	-1.0
2,225,310	+	cheY-1	SO2120	0.76	+1.3
2,225,310	+	cheY-1	SO2120	0.76	-0.2
2,225,313	-	cheY-1	SO2120	0.77	-0.5
2,225,317	+	cheY-1	SO2120	0.78	+0.2
2,225,318	-	cheY-1	SO2120	0.78	-1.3
2,225,318	-	cheY-1	SO2120	0.78	+0.9
2,225,318	-	cheY-1	SO2120	0.78	+0.9
2,225,318	-	cheY-1	SO2120	0.78	+0.8
2,225,318	-	cheY-1	SO2120	0.78	+0.0
2,225,374	+				-0.8
2,225,386	+				-1.4
2,225,394	-				+0.8
2,225,594	+				-0.5
2,225,594	+				+0.2
2,225,594	+				+0.7
2,225,594	+				+0.7
2,225,602	-				+0.3
2,225,602	-				+0.1
2,225,602	-				+0.0
2,225,602	-				+0.2
2,225,602	-				+0.4
2,225,684	+	cheA	SO2121	0.13	+0.4
2,225,723	-	cheA	SO2121	0.15	-0.0
2,225,723	-	cheA	SO2121	0.15	+0.4
2,225,723	-	cheA	SO2121	0.15	+0.7
2,225,797	-	cheA	SO2121	0.18	+0.0
2,225,843	-	cheA	SO2121	0.20	+1.3
2,225,900	+	cheA	SO2121	0.23	-1.0
2,225,936	+	cheA	SO2121	0.25	-0.5
2,225,936	+	cheA	SO2121	0.25	-0.1
2,225,944	-	cheA	SO2121	0.25	-0.3
2,226,055	+	cheA	SO2121	0.30	-0.7
2,226,078	+	cheA	SO2121	0.31	-0.1
2,226,206	-	cheA	SO2121	0.38	-0.9
2,226,234	+	cheA	SO2121	0.39	-0.1
2,226,244	+	cheA	SO2121	0.39	-0.1
2,226,254	-	cheA	SO2121	0.40	+0.3
2,226,277	+	cheA	SO2121	0.41	-0.1
2,226,277	+	cheA	SO2121	0.41	+0.2
2,226,278	-	cheA	SO2121	0.41	+0.1
2,226,285	-	cheA	SO2121	0.41	+0.2
2,226,285	-	cheA	SO2121	0.41	+0.5
2,226,285	-	cheA	SO2121	0.41	+0.5
2,226,365	-	cheA	SO2121	0.45	+0.4
2,226,513	-	cheA	SO2121	0.52	-0.8
2,226,706	+	cheA	SO2121	0.61	-0.6
2,226,801	+	cheA	SO2121	0.66	-0.6
2,226,854	+	cheA	SO2121	0.68	+0.3
2,226,854	+	cheA	SO2121	0.68	-0.4
2,226,854	+	cheA	SO2121	0.68	-0.3
2,226,854	+	cheA	SO2121	0.68	-0.1
2,226,862	-	cheA	SO2121	0.69	-0.2
2,226,862	-	cheA	SO2121	0.69	+0.2
2,226,862	-	cheA	SO2121	0.69	-0.6
2,226,862	-	cheA	SO2121	0.69	-0.9
2,226,862	-	cheA	SO2121	0.69	+0.2
2,226,958	+	cheA	SO2121	0.73	-0.3
2,226,973	-	cheA	SO2121	0.74	+0.3
2,227,010	+	cheA	SO2121	0.76	-0.6
2,227,010	+	cheA	SO2121	0.76	+0.3
2,227,018	-	cheA	SO2121	0.76	-0.4
2,227,078	-	cheA	SO2121	0.79	+0.4
2,227,125	+	cheA	SO2121	0.81	+0.8
2,227,131	-	cheA	SO2121	0.81	-0.8
2,227,229	+	cheA	SO2121	0.86	-0.9
2,227,229	+	cheA	SO2121	0.86	-1.2
2,227,229	+	cheA	SO2121	0.86	-0.6
2,227,237	-	cheA	SO2121	0.86	-0.7
2,227,237	-	cheA	SO2121	0.86	+0.0
2,227,237	-	cheA	SO2121	0.86	-0.0
2,227,270	-	cheA	SO2121	0.88	+2.6
2,227,270	-	cheA	SO2121	0.88	-1.1
2,227,308	+	cheA	SO2121	0.90	-0.1
2,227,316	-				+0.6
2,227,318	+				+0.1
2,227,320	+				-0.3
2,227,328	-				+0.5
2,227,328	-				+0.4
2,227,328	-				-0.5
2,227,341	-				+0.5
2,227,505	-				+0.4
2,227,527	+				+0.3
2,227,559	+				-0.2
2,227,604	+	cheW-1	SO2122	0.13	-0.0
2,227,612	-	cheW-1	SO2122	0.15	-0.8
2,227,612	-	cheW-1	SO2122	0.15	-0.3
2,227,612	-	cheW-1	SO2122	0.15	-0.7
2,227,612	-	cheW-1	SO2122	0.15	+0.1
2,227,612	-	cheW-1	SO2122	0.15	+0.0
2,227,622	-	cheW-1	SO2122	0.17	-0.6
2,227,671	-	cheW-1	SO2122	0.26	+0.2
2,227,693	+	cheW-1	SO2122	0.30	+0.0
2,227,723	-	cheW-1	SO2122	0.36	+0.5
2,227,742	-	cheW-1	SO2122	0.40	-0.6
2,227,743	-	cheW-1	SO2122	0.40	-0.4
2,227,784	+	cheW-1	SO2122	0.48	-0.3
2,227,784	+	cheW-1	SO2122	0.48	+0.2
2,227,792	-	cheW-1	SO2122	0.50	+0.1
2,227,792	-	cheW-1	SO2122	0.50	+0.3
2,227,792	-	cheW-1	SO2122	0.50	+0.1
2,227,792	-	cheW-1	SO2122	0.50	-0.1
2,227,792	-	cheW-1	SO2122	0.50	-0.4
2,227,792	-	cheW-1	SO2122	0.50	-0.5
2,227,802	-	cheW-1	SO2122	0.52	+1.2
2,227,819	-	cheW-1	SO2122	0.55	-0.3
2,227,887	+	cheW-1	SO2122	0.68	+0.6
2,227,931	+	cheW-1	SO2122	0.77	+1.0
2,227,940	-	cheW-1	SO2122	0.79	+0.6
2,228,032	-				+0.5
2,228,043	+				+0.5
2,228,044	+				-0.3
2,228,051	-				-0.1
2,228,053	-				+0.7
2,228,059	-				-0.2
2,228,080	+				+0.6
2,228,164	+				+0.2
2,228,183	+				+0.2
2,228,236	+				-0.5
2,228,244	-				+0.2
2,228,244	-				+0.4
2,228,308	+		SO2123	0.13	+1.0
2,228,316	-		SO2123	0.13	-0.0
2,228,335	+		SO2123	0.14	+0.2
2,228,335	-		SO2123	0.14	-0.1
2,228,353	-		SO2123	0.15	-1.4
2,228,432	-		SO2123	0.19	+0.5
2,228,432	-		SO2123	0.19	-0.2
2,228,432	-		SO2123	0.19	+0.9
2,228,446	+		SO2123	0.20	+0.2
2,228,510	-		SO2123	0.23	+0.5
2,228,510	-		SO2123	0.23	-0.6
2,228,510	-		SO2123	0.23	+0.4