Experiment: Def Chlorate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0767 and Psest_0768 are separated by 3 nucleotides Psest_0768 and Psest_0769 are separated by 135 nucleotides Psest_0769 and Psest_0770 are separated by 47 nucleotides
Psest_0767: Psest_0767 - diguanylate cyclase (GGDEF) domain, at 836,230 to 837,636
_0767
Psest_0768: Psest_0768 - Uncharacterized conserved protein, at 837,640 to 838,467
_0768
Psest_0769: Psest_0769 - Predicted membrane protein, at 838,603 to 839,331
_0769
Psest_0770: Psest_0770 - alkylphosphonate utilization operon protein PhnA, at 839,379 to 839,723
_0770
Position (kb) 837
838
839 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 836.827 kb on + strand, within Psest_0767 at 836.828 kb on - strand, within Psest_0767 at 836.828 kb on - strand, within Psest_0767 at 837.071 kb on + strand, within Psest_0767 at 837.072 kb on - strand, within Psest_0767 at 837.072 kb on - strand, within Psest_0767 at 837.441 kb on + strand, within Psest_0767 at 837.442 kb on - strand, within Psest_0767 at 837.442 kb on - strand, within Psest_0767 at 837.671 kb on + strand at 837.671 kb on + strand at 837.671 kb on + strand at 837.671 kb on + strand at 837.672 kb on - strand at 837.672 kb on - strand at 837.672 kb on - strand at 837.768 kb on - strand, within Psest_0768 at 837.939 kb on + strand, within Psest_0768 at 837.940 kb on - strand, within Psest_0768 at 838.031 kb on + strand, within Psest_0768 at 838.031 kb on + strand, within Psest_0768 at 838.032 kb on - strand, within Psest_0768 at 838.032 kb on - strand, within Psest_0768 at 838.032 kb on - strand, within Psest_0768 at 838.032 kb on - strand, within Psest_0768 at 838.032 kb on - strand, within Psest_0768 at 838.091 kb on + strand, within Psest_0768 at 838.184 kb on + strand, within Psest_0768 at 838.185 kb on - strand, within Psest_0768 at 838.185 kb on - strand, within Psest_0768 at 838.242 kb on + strand, within Psest_0768 at 838.243 kb on - strand, within Psest_0768 at 838.244 kb on + strand, within Psest_0768 at 838.244 kb on + strand, within Psest_0768 at 838.328 kb on + strand, within Psest_0768 at 838.328 kb on + strand, within Psest_0768 at 838.328 kb on + strand, within Psest_0768 at 838.328 kb on + strand, within Psest_0768 at 838.329 kb on - strand, within Psest_0768 at 838.329 kb on - strand, within Psest_0768 at 838.355 kb on + strand, within Psest_0768 at 838.355 kb on + strand, within Psest_0768 at 838.355 kb on + strand, within Psest_0768 at 838.355 kb on + strand, within Psest_0768 at 838.355 kb on + strand, within Psest_0768 at 838.355 kb on + strand, within Psest_0768 at 838.356 kb on - strand, within Psest_0768 at 838.356 kb on - strand, within Psest_0768 at 838.356 kb on - strand, within Psest_0768 at 838.526 kb on + strand at 838.747 kb on + strand, within Psest_0769 at 838.747 kb on + strand, within Psest_0769 at 838.747 kb on + strand, within Psest_0769 at 838.747 kb on + strand, within Psest_0769 at 838.747 kb on + strand, within Psest_0769 at 838.747 kb on + strand, within Psest_0769 at 838.747 kb on + strand, within Psest_0769 at 838.747 kb on + strand, within Psest_0769 at 838.747 kb on + strand, within Psest_0769 at 838.747 kb on + strand, within Psest_0769 at 838.747 kb on + strand, within Psest_0769 at 838.747 kb on + strand, within Psest_0769 at 838.748 kb on - strand, within Psest_0769 at 838.748 kb on - strand, within Psest_0769 at 838.748 kb on - strand, within Psest_0769 at 838.748 kb on - strand, within Psest_0769 at 838.748 kb on - strand, within Psest_0769 at 838.748 kb on - strand, within Psest_0769 at 839.041 kb on + strand, within Psest_0769 at 839.041 kb on + strand, within Psest_0769 at 839.041 kb on + strand, within Psest_0769 at 839.042 kb on - strand, within Psest_0769 at 839.042 kb on - strand, within Psest_0769 at 839.074 kb on + strand, within Psest_0769 at 839.075 kb on - strand, within Psest_0769 at 839.215 kb on + strand, within Psest_0769 at 839.215 kb on + strand, within Psest_0769 at 839.292 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Def Chlorate 40 mM remove 836,827 + Psest_0767 0.42 -2.1 836,828 - Psest_0767 0.43 +0.2 836,828 - Psest_0767 0.43 -0.2 837,071 + Psest_0767 0.60 -0.2 837,072 - Psest_0767 0.60 +0.6 837,072 - Psest_0767 0.60 +0.2 837,441 + Psest_0767 0.86 -1.5 837,442 - Psest_0767 0.86 -0.8 837,442 - Psest_0767 0.86 +1.2 837,671 + -0.0 837,671 + -0.6 837,671 + +0.1 837,671 + -1.2 837,672 - +0.1 837,672 - -0.4 837,672 - -0.0 837,768 - Psest_0768 0.15 +1.2 837,939 + Psest_0768 0.36 -0.7 837,940 - Psest_0768 0.36 -0.2 838,031 + Psest_0768 0.47 -1.2 838,031 + Psest_0768 0.47 -1.7 838,032 - Psest_0768 0.47 -0.9 838,032 - Psest_0768 0.47 -0.5 838,032 - Psest_0768 0.47 -0.9 838,032 - Psest_0768 0.47 -1.4 838,032 - Psest_0768 0.47 -0.7 838,091 + Psest_0768 0.54 -2.5 838,184 + Psest_0768 0.66 -1.4 838,185 - Psest_0768 0.66 -1.9 838,185 - Psest_0768 0.66 -0.4 838,242 + Psest_0768 0.73 -0.3 838,243 - Psest_0768 0.73 +0.6 838,244 + Psest_0768 0.73 -0.2 838,244 + Psest_0768 0.73 -0.6 838,328 + Psest_0768 0.83 +0.2 838,328 + Psest_0768 0.83 -2.6 838,328 + Psest_0768 0.83 +0.4 838,328 + Psest_0768 0.83 +0.2 838,329 - Psest_0768 0.83 -1.4 838,329 - Psest_0768 0.83 -1.0 838,355 + Psest_0768 0.86 -0.7 838,355 + Psest_0768 0.86 -0.7 838,355 + Psest_0768 0.86 +0.7 838,355 + Psest_0768 0.86 -0.7 838,355 + Psest_0768 0.86 -0.5 838,355 + Psest_0768 0.86 +0.8 838,356 - Psest_0768 0.86 -0.5 838,356 - Psest_0768 0.86 -1.4 838,356 - Psest_0768 0.86 -1.3 838,526 + +0.1 838,747 + Psest_0769 0.20 +0.2 838,747 + Psest_0769 0.20 -0.1 838,747 + Psest_0769 0.20 -1.0 838,747 + Psest_0769 0.20 -1.3 838,747 + Psest_0769 0.20 -0.7 838,747 + Psest_0769 0.20 -1.7 838,747 + Psest_0769 0.20 -0.6 838,747 + Psest_0769 0.20 -1.2 838,747 + Psest_0769 0.20 -0.7 838,747 + Psest_0769 0.20 +0.1 838,747 + Psest_0769 0.20 -3.1 838,747 + Psest_0769 0.20 -0.3 838,748 - Psest_0769 0.20 -2.0 838,748 - Psest_0769 0.20 -1.0 838,748 - Psest_0769 0.20 -0.2 838,748 - Psest_0769 0.20 +0.0 838,748 - Psest_0769 0.20 -0.5 838,748 - Psest_0769 0.20 +0.4 839,041 + Psest_0769 0.60 -0.5 839,041 + Psest_0769 0.60 -0.3 839,041 + Psest_0769 0.60 -0.8 839,042 - Psest_0769 0.60 -1.9 839,042 - Psest_0769 0.60 -0.3 839,074 + Psest_0769 0.65 -1.7 839,075 - Psest_0769 0.65 +1.3 839,215 + Psest_0769 0.84 -2.0 839,215 + Psest_0769 0.84 +0.2 839,292 + -1.0
Or see this region's nucleotide sequence