Experiment: Def Chlorate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0660 and Psest_0661 are separated by 261 nucleotides Psest_0661 and Psest_0662 are separated by 16 nucleotides Psest_0662 and Psest_0663 are separated by 72 nucleotides
Psest_0660: Psest_0660 - Methyl-accepting chemotaxis protein, at 717,090 to 718,175
_0660
Psest_0661: Psest_0661 - PAS domain S-box, at 718,437 to 720,476
_0661
Psest_0662: Psest_0662 - Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 720,493 to 721,146
_0662
Psest_0663: Psest_0663 - PAS fold., at 721,219 to 723,018
_0663
Position (kb) 718
719
720
721 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7 at 717.630 kb on - strand, within Psest_0660 at 717.630 kb on - strand, within Psest_0660 at 717.756 kb on - strand, within Psest_0660 at 718.250 kb on - strand at 718.359 kb on + strand at 718.359 kb on + strand at 718.359 kb on + strand at 718.360 kb on - strand at 718.360 kb on - strand at 718.474 kb on - strand at 718.525 kb on - strand at 718.599 kb on + strand at 718.599 kb on + strand at 718.599 kb on + strand at 718.599 kb on + strand at 718.600 kb on - strand at 718.600 kb on - strand at 718.600 kb on - strand at 718.600 kb on - strand at 718.601 kb on + strand at 718.601 kb on + strand at 718.601 kb on + strand at 718.601 kb on + strand at 718.601 kb on + strand at 718.601 kb on + strand at 718.601 kb on + strand at 718.601 kb on + strand at 718.601 kb on + strand at 718.601 kb on + strand at 718.601 kb on + strand at 718.601 kb on + strand at 718.601 kb on + strand at 718.602 kb on - strand at 718.602 kb on - strand at 718.602 kb on - strand at 718.602 kb on - strand at 718.602 kb on - strand at 718.602 kb on - strand at 718.602 kb on - strand at 718.602 kb on - strand at 718.602 kb on - strand at 718.602 kb on - strand at 718.602 kb on - strand at 718.863 kb on + strand, within Psest_0661 at 718.864 kb on - strand, within Psest_0661 at 719.108 kb on - strand, within Psest_0661 at 719.229 kb on + strand, within Psest_0661 at 719.292 kb on - strand, within Psest_0661 at 719.356 kb on + strand, within Psest_0661 at 719.356 kb on + strand, within Psest_0661 at 719.356 kb on + strand, within Psest_0661 at 719.356 kb on + strand, within Psest_0661 at 719.356 kb on + strand, within Psest_0661 at 719.357 kb on - strand, within Psest_0661 at 719.357 kb on - strand, within Psest_0661 at 719.357 kb on - strand, within Psest_0661 at 719.357 kb on - strand, within Psest_0661 at 719.357 kb on - strand, within Psest_0661 at 719.462 kb on + strand, within Psest_0661 at 719.462 kb on + strand, within Psest_0661 at 719.462 kb on + strand, within Psest_0661 at 719.462 kb on + strand, within Psest_0661 at 719.462 kb on + strand, within Psest_0661 at 719.462 kb on + strand, within Psest_0661 at 719.462 kb on + strand, within Psest_0661 at 719.463 kb on - strand, within Psest_0661 at 719.463 kb on - strand, within Psest_0661 at 719.463 kb on - strand, within Psest_0661 at 719.686 kb on + strand, within Psest_0661 at 719.686 kb on + strand, within Psest_0661 at 719.686 kb on + strand, within Psest_0661 at 719.687 kb on - strand, within Psest_0661 at 719.687 kb on - strand, within Psest_0661 at 719.687 kb on - strand, within Psest_0661 at 720.712 kb on + strand, within Psest_0662 at 720.760 kb on + strand, within Psest_0662 at 720.760 kb on + strand, within Psest_0662 at 720.761 kb on - strand, within Psest_0662 at 721.091 kb on + strand at 721.255 kb on + strand at 721.256 kb on - strand at 721.343 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Def Chlorate 40 mM remove 717,630 - Psest_0660 0.50 +0.1 717,630 - Psest_0660 0.50 -1.0 717,756 - Psest_0660 0.61 -0.4 718,250 - +1.9 718,359 + +2.5 718,359 + +0.6 718,359 + +0.9 718,360 - +1.1 718,360 - +3.5 718,474 - +0.3 718,525 - +1.9 718,599 + +1.5 718,599 + +2.5 718,599 + -0.7 718,599 + -0.1 718,600 - +1.3 718,600 - +0.9 718,600 - -0.1 718,600 - +0.5 718,601 + +0.3 718,601 + +0.9 718,601 + +0.9 718,601 + +0.3 718,601 + +1.1 718,601 + +1.2 718,601 + +0.5 718,601 + -0.7 718,601 + +0.2 718,601 + +1.3 718,601 + +0.9 718,601 + +0.9 718,601 + +0.3 718,602 - +2.0 718,602 - +2.3 718,602 - +1.9 718,602 - -1.5 718,602 - +1.9 718,602 - -0.7 718,602 - +1.5 718,602 - -0.0 718,602 - +0.3 718,602 - +2.5 718,602 - -0.7 718,863 + Psest_0661 0.21 +1.9 718,864 - Psest_0661 0.21 +0.5 719,108 - Psest_0661 0.33 -0.2 719,229 + Psest_0661 0.39 +1.4 719,292 - Psest_0661 0.42 +6.9 719,356 + Psest_0661 0.45 -0.7 719,356 + Psest_0661 0.45 +0.9 719,356 + Psest_0661 0.45 +0.3 719,356 + Psest_0661 0.45 +1.9 719,356 + Psest_0661 0.45 +0.9 719,357 - Psest_0661 0.45 -0.3 719,357 - Psest_0661 0.45 -1.3 719,357 - Psest_0661 0.45 +0.3 719,357 - Psest_0661 0.45 +0.1 719,357 - Psest_0661 0.45 -0.5 719,462 + Psest_0661 0.50 +1.9 719,462 + Psest_0661 0.50 +0.3 719,462 + Psest_0661 0.50 +0.3 719,462 + Psest_0661 0.50 +0.9 719,462 + Psest_0661 0.50 +0.9 719,462 + Psest_0661 0.50 -0.2 719,462 + Psest_0661 0.50 +0.3 719,463 - Psest_0661 0.50 -0.3 719,463 - Psest_0661 0.50 +0.9 719,463 - Psest_0661 0.50 +1.3 719,686 + Psest_0661 0.61 +1.9 719,686 + Psest_0661 0.61 +0.0 719,686 + Psest_0661 0.61 +0.6 719,687 - Psest_0661 0.61 +1.5 719,687 - Psest_0661 0.61 +0.9 719,687 - Psest_0661 0.61 +1.9 720,712 + Psest_0662 0.33 +1.9 720,760 + Psest_0662 0.41 +1.5 720,760 + Psest_0662 0.41 -0.5 720,761 - Psest_0662 0.41 -0.5 721,091 + +1.7 721,255 + +0.9 721,256 - -2.5 721,343 + -0.1
Or see this region's nucleotide sequence