Experiment: Def Chlorate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_4242 and Psest_4243 are separated by 4 nucleotides Psest_4243 and Psest_4244 are separated by 2 nucleotides Psest_4244 and Psest_4245 are separated by 5 nucleotides Psest_4245 and Psest_4246 are separated by 1 nucleotides
Psest_4242: Psest_4242 - type VI secretion system FHA domain protein, at 4,424,609 to 4,425,805
_4242
Psest_4243: Psest_4243 - type VI secretion lipoprotein, VC_A0113 family, at 4,425,810 to 4,426,292
_4243
Psest_4244: Psest_4244 - type VI secretion protein, VC_A0114 family, at 4,426,295 to 4,427,626
_4244
Psest_4245: Psest_4245 - type IV / VI secretion system protein, DotU family, at 4,427,632 to 4,428,513
_4245
Psest_4246: Psest_4246 - type VI secretion protein IcmF, at 4,428,515 to 4,432,054
_4246
Position (kb)
4426
4427
4428 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 4425.752 kb on + strand at 4425.752 kb on + strand at 4425.752 kb on + strand at 4425.752 kb on + strand at 4425.752 kb on + strand at 4425.752 kb on + strand at 4425.753 kb on - strand at 4425.753 kb on - strand at 4425.753 kb on - strand at 4425.753 kb on - strand at 4425.753 kb on - strand at 4425.753 kb on - strand at 4425.753 kb on - strand at 4425.753 kb on - strand at 4425.753 kb on - strand at 4425.753 kb on - strand at 4425.753 kb on - strand at 4425.753 kb on - strand at 4425.753 kb on - strand at 4425.753 kb on - strand at 4425.753 kb on - strand at 4425.753 kb on - strand at 4426.140 kb on + strand, within Psest_4243 at 4426.191 kb on + strand, within Psest_4243 at 4426.191 kb on + strand, within Psest_4243 at 4426.290 kb on + strand at 4426.290 kb on + strand at 4426.290 kb on + strand at 4426.290 kb on + strand at 4426.291 kb on - strand at 4426.291 kb on - strand at 4426.291 kb on - strand at 4426.291 kb on - strand at 4426.291 kb on - strand at 4426.367 kb on + strand at 4426.370 kb on + strand at 4426.371 kb on - strand at 4426.371 kb on - strand at 4426.371 kb on - strand at 4426.371 kb on - strand at 4426.371 kb on - strand at 4426.371 kb on - strand at 4426.371 kb on - strand at 4426.412 kb on + strand at 4426.412 kb on + strand at 4426.413 kb on - strand at 4426.413 kb on - strand at 4426.413 kb on - strand at 4426.413 kb on - strand at 4426.474 kb on - strand, within Psest_4244 at 4426.583 kb on + strand, within Psest_4244 at 4426.584 kb on - strand, within Psest_4244 at 4426.584 kb on - strand, within Psest_4244 at 4426.658 kb on + strand, within Psest_4244 at 4426.660 kb on + strand, within Psest_4244 at 4426.660 kb on + strand, within Psest_4244 at 4426.660 kb on + strand, within Psest_4244 at 4426.661 kb on - strand, within Psest_4244 at 4426.778 kb on + strand, within Psest_4244 at 4426.778 kb on + strand, within Psest_4244 at 4426.778 kb on + strand, within Psest_4244 at 4426.779 kb on - strand, within Psest_4244 at 4426.803 kb on + strand, within Psest_4244 at 4426.804 kb on - strand, within Psest_4244 at 4426.859 kb on + strand, within Psest_4244 at 4426.859 kb on + strand, within Psest_4244 at 4426.859 kb on + strand, within Psest_4244 at 4426.859 kb on + strand, within Psest_4244 at 4426.859 kb on + strand, within Psest_4244 at 4426.859 kb on + strand, within Psest_4244 at 4426.859 kb on + strand, within Psest_4244 at 4426.859 kb on + strand, within Psest_4244 at 4426.859 kb on + strand, within Psest_4244 at 4426.859 kb on + strand, within Psest_4244 at 4426.859 kb on + strand, within Psest_4244 at 4426.859 kb on + strand, within Psest_4244 at 4426.859 kb on + strand, within Psest_4244 at 4426.859 kb on + strand, within Psest_4244 at 4426.859 kb on + strand, within Psest_4244 at 4426.859 kb on + strand, within Psest_4244 at 4426.860 kb on - strand, within Psest_4244 at 4426.860 kb on - strand, within Psest_4244 at 4426.860 kb on - strand, within Psest_4244 at 4426.860 kb on - strand, within Psest_4244 at 4426.860 kb on - strand, within Psest_4244 at 4426.860 kb on - strand, within Psest_4244 at 4426.860 kb on - strand, within Psest_4244 at 4426.860 kb on - strand, within Psest_4244 at 4426.860 kb on - strand, within Psest_4244 at 4426.860 kb on - strand, within Psest_4244 at 4426.860 kb on - strand, within Psest_4244 at 4426.860 kb on - strand, within Psest_4244 at 4426.860 kb on - strand, within Psest_4244 at 4426.860 kb on - strand, within Psest_4244 at 4426.860 kb on - strand, within Psest_4244 at 4426.860 kb on - strand, within Psest_4244 at 4426.860 kb on - strand, within Psest_4244 at 4426.860 kb on - strand, within Psest_4244 at 4426.860 kb on - strand, within Psest_4244 at 4427.043 kb on - strand, within Psest_4244 at 4427.043 kb on - strand, within Psest_4244 at 4427.078 kb on + strand, within Psest_4244 at 4427.505 kb on - strand at 4427.767 kb on + strand, within Psest_4245 at 4427.767 kb on + strand, within Psest_4245 at 4427.768 kb on - strand, within Psest_4245 at 4427.768 kb on - strand, within Psest_4245 at 4427.768 kb on - strand, within Psest_4245 at 4427.768 kb on - strand, within Psest_4245 at 4427.822 kb on + strand, within Psest_4245 at 4427.987 kb on - strand, within Psest_4245 at 4428.172 kb on + strand, within Psest_4245 at 4428.172 kb on + strand, within Psest_4245 at 4428.172 kb on + strand, within Psest_4245 at 4428.172 kb on + strand, within Psest_4245 at 4428.172 kb on + strand, within Psest_4245 at 4428.172 kb on + strand, within Psest_4245 at 4428.172 kb on + strand, within Psest_4245 at 4428.172 kb on + strand, within Psest_4245 at 4428.173 kb on - strand, within Psest_4245 at 4428.173 kb on - strand, within Psest_4245 at 4428.173 kb on - strand, within Psest_4245 at 4428.173 kb on - strand, within Psest_4245 at 4428.173 kb on - strand, within Psest_4245 at 4428.173 kb on - strand, within Psest_4245 at 4428.173 kb on - strand, within Psest_4245 at 4428.173 kb on - strand, within Psest_4245 at 4428.173 kb on - strand, within Psest_4245 at 4428.205 kb on + strand, within Psest_4245 at 4428.206 kb on - strand, within Psest_4245 at 4428.407 kb on - strand, within Psest_4245 at 4428.461 kb on - strand at 4428.461 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Def Chlorate 40 mM remove 4,425,752 + +0.2 4,425,752 + +1.3 4,425,752 + +1.7 4,425,752 + +0.5 4,425,752 + -0.1 4,425,752 + +0.6 4,425,753 - +1.7 4,425,753 - +2.9 4,425,753 - +4.5 4,425,753 - +1.9 4,425,753 - +0.9 4,425,753 - +0.3 4,425,753 - +1.9 4,425,753 - +0.3 4,425,753 - -0.9 4,425,753 - +2.5 4,425,753 - -0.7 4,425,753 - +1.3 4,425,753 - +1.9 4,425,753 - +1.9 4,425,753 - +1.9 4,425,753 - +0.6 4,426,140 + Psest_4243 0.68 +0.3 4,426,191 + Psest_4243 0.79 +0.2 4,426,191 + Psest_4243 0.79 -0.5 4,426,290 + -1.8 4,426,290 + +1.9 4,426,290 + +0.5 4,426,290 + -0.6 4,426,291 - +0.3 4,426,291 - +0.9 4,426,291 - +1.9 4,426,291 - +0.7 4,426,291 - +0.9 4,426,367 + -0.9 4,426,370 + -0.4 4,426,371 - -0.1 4,426,371 - +0.1 4,426,371 - -1.1 4,426,371 - +1.5 4,426,371 - -0.7 4,426,371 - +1.0 4,426,371 - +0.9 4,426,412 + -0.1 4,426,412 + -0.4 4,426,413 - +0.9 4,426,413 - -0.8 4,426,413 - +0.6 4,426,413 - +0.6 4,426,474 - Psest_4244 0.13 +1.9 4,426,583 + Psest_4244 0.22 -0.0 4,426,584 - Psest_4244 0.22 +0.9 4,426,584 - Psest_4244 0.22 -0.3 4,426,658 + Psest_4244 0.27 -0.5 4,426,660 + Psest_4244 0.27 -0.9 4,426,660 + Psest_4244 0.27 -0.4 4,426,660 + Psest_4244 0.27 -2.4 4,426,661 - Psest_4244 0.27 +1.5 4,426,778 + Psest_4244 0.36 +1.7 4,426,778 + Psest_4244 0.36 +0.4 4,426,778 + Psest_4244 0.36 +1.9 4,426,779 - Psest_4244 0.36 +1.7 4,426,803 + Psest_4244 0.38 +0.1 4,426,804 - Psest_4244 0.38 +0.6 4,426,859 + Psest_4244 0.42 -0.9 4,426,859 + Psest_4244 0.42 +0.6 4,426,859 + Psest_4244 0.42 -0.4 4,426,859 + Psest_4244 0.42 -0.7 4,426,859 + Psest_4244 0.42 -0.1 4,426,859 + Psest_4244 0.42 -0.1 4,426,859 + Psest_4244 0.42 +0.6 4,426,859 + Psest_4244 0.42 +0.1 4,426,859 + Psest_4244 0.42 -0.2 4,426,859 + Psest_4244 0.42 +0.3 4,426,859 + Psest_4244 0.42 +0.7 4,426,859 + Psest_4244 0.42 +0.9 4,426,859 + Psest_4244 0.42 -0.4 4,426,859 + Psest_4244 0.42 +1.3 4,426,859 + Psest_4244 0.42 +0.8 4,426,859 + Psest_4244 0.42 +0.8 4,426,860 - Psest_4244 0.42 +0.6 4,426,860 - Psest_4244 0.42 +1.3 4,426,860 - Psest_4244 0.42 +0.3 4,426,860 - Psest_4244 0.42 +0.1 4,426,860 - Psest_4244 0.42 +0.9 4,426,860 - Psest_4244 0.42 +0.2 4,426,860 - Psest_4244 0.42 -0.1 4,426,860 - Psest_4244 0.42 -0.1 4,426,860 - Psest_4244 0.42 +0.9 4,426,860 - Psest_4244 0.42 -0.1 4,426,860 - Psest_4244 0.42 +0.9 4,426,860 - Psest_4244 0.42 +0.9 4,426,860 - Psest_4244 0.42 +2.2 4,426,860 - Psest_4244 0.42 -0.3 4,426,860 - Psest_4244 0.42 -0.9 4,426,860 - Psest_4244 0.42 -0.1 4,426,860 - Psest_4244 0.42 +0.0 4,426,860 - Psest_4244 0.42 -0.1 4,426,860 - Psest_4244 0.42 +0.6 4,427,043 - Psest_4244 0.56 -0.1 4,427,043 - Psest_4244 0.56 +1.2 4,427,078 + Psest_4244 0.59 -0.6 4,427,505 - +0.9 4,427,767 + Psest_4245 0.15 -3.1 4,427,767 + Psest_4245 0.15 +1.9 4,427,768 - Psest_4245 0.15 -1.8 4,427,768 - Psest_4245 0.15 +1.3 4,427,768 - Psest_4245 0.15 -0.7 4,427,768 - Psest_4245 0.15 +0.7 4,427,822 + Psest_4245 0.22 +1.2 4,427,987 - Psest_4245 0.40 -0.6 4,428,172 + Psest_4245 0.61 -0.5 4,428,172 + Psest_4245 0.61 +0.6 4,428,172 + Psest_4245 0.61 +1.5 4,428,172 + Psest_4245 0.61 +0.9 4,428,172 + Psest_4245 0.61 +0.7 4,428,172 + Psest_4245 0.61 +0.3 4,428,172 + Psest_4245 0.61 -0.3 4,428,172 + Psest_4245 0.61 +0.6 4,428,173 - Psest_4245 0.61 -0.1 4,428,173 - Psest_4245 0.61 +0.1 4,428,173 - Psest_4245 0.61 +1.6 4,428,173 - Psest_4245 0.61 +0.9 4,428,173 - Psest_4245 0.61 +0.9 4,428,173 - Psest_4245 0.61 +0.5 4,428,173 - Psest_4245 0.61 +0.5 4,428,173 - Psest_4245 0.61 +1.1 4,428,173 - Psest_4245 0.61 -0.7 4,428,205 + Psest_4245 0.65 -1.3 4,428,206 - Psest_4245 0.65 +0.2 4,428,407 - Psest_4245 0.88 +0.3 4,428,461 - +0.3 4,428,461 - +0.2
Or see this region's nucleotide sequence