Experiment: Def Chlorate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3713 and Psest_3714 are separated by 23 nucleotides Psest_3714 and Psest_3715 overlap by 4 nucleotides
Psest_3713: Psest_3713 - 3-dehydroquinate synthase, at 3,881,192 to 3,882,295
_3713
Psest_3714: Psest_3714 - Shikimate kinase, at 3,882,319 to 3,882,873
_3714
Psest_3715: Psest_3715 - type IV pilus secretin (or competence protein) PilQ, at 3,882,870 to 3,884,951
_3715
Position (kb)
3882
3883 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3882.311 kb on - strand at 3882.311 kb on - strand at 3882.980 kb on - strand at 3882.980 kb on - strand at 3883.032 kb on - strand at 3883.101 kb on - strand, within Psest_3715 at 3883.101 kb on - strand, within Psest_3715 at 3883.109 kb on + strand, within Psest_3715 at 3883.109 kb on + strand, within Psest_3715 at 3883.110 kb on - strand, within Psest_3715 at 3883.110 kb on - strand, within Psest_3715 at 3883.110 kb on - strand, within Psest_3715 at 3883.110 kb on - strand, within Psest_3715 at 3883.235 kb on + strand, within Psest_3715 at 3883.235 kb on + strand, within Psest_3715 at 3883.235 kb on + strand, within Psest_3715 at 3883.236 kb on - strand, within Psest_3715 at 3883.236 kb on - strand, within Psest_3715 at 3883.236 kb on - strand, within Psest_3715 at 3883.236 kb on - strand, within Psest_3715 at 3883.236 kb on - strand, within Psest_3715 at 3883.244 kb on + strand, within Psest_3715 at 3883.244 kb on + strand, within Psest_3715 at 3883.244 kb on + strand, within Psest_3715 at 3883.245 kb on - strand, within Psest_3715 at 3883.245 kb on - strand, within Psest_3715 at 3883.245 kb on - strand, within Psest_3715 at 3883.245 kb on - strand, within Psest_3715 at 3883.245 kb on - strand, within Psest_3715 at 3883.392 kb on - strand, within Psest_3715 at 3883.392 kb on - strand, within Psest_3715 at 3883.392 kb on - strand, within Psest_3715 at 3883.404 kb on + strand, within Psest_3715 at 3883.405 kb on - strand, within Psest_3715 at 3883.405 kb on - strand, within Psest_3715 at 3883.405 kb on - strand, within Psest_3715 at 3883.627 kb on - strand, within Psest_3715 at 3883.647 kb on + strand, within Psest_3715 at 3883.648 kb on - strand, within Psest_3715 at 3883.648 kb on - strand, within Psest_3715 at 3883.696 kb on + strand, within Psest_3715 at 3883.706 kb on + strand, within Psest_3715 at 3883.706 kb on + strand, within Psest_3715 at 3883.706 kb on + strand, within Psest_3715 at 3883.706 kb on + strand, within Psest_3715 at 3883.706 kb on + strand, within Psest_3715 at 3883.706 kb on + strand, within Psest_3715 at 3883.706 kb on + strand, within Psest_3715 at 3883.706 kb on + strand, within Psest_3715 at 3883.707 kb on - strand, within Psest_3715 at 3883.707 kb on - strand, within Psest_3715 at 3883.707 kb on - strand, within Psest_3715 at 3883.733 kb on + strand, within Psest_3715 at 3883.733 kb on + strand, within Psest_3715 at 3883.734 kb on - strand, within Psest_3715 at 3883.763 kb on + strand, within Psest_3715 at 3883.810 kb on + strand, within Psest_3715 at 3883.810 kb on + strand, within Psest_3715 at 3883.811 kb on - strand, within Psest_3715 at 3883.811 kb on - strand, within Psest_3715 at 3883.815 kb on - strand, within Psest_3715
Per-strain Table
Position Strand Gene LocusTag Fraction Def Chlorate 40 mM remove 3,882,311 - -0.8 3,882,311 - -0.6 3,882,980 - -0.0 3,882,980 - +0.2 3,883,032 - +0.7 3,883,101 - Psest_3715 0.11 -1.0 3,883,101 - Psest_3715 0.11 -0.6 3,883,109 + Psest_3715 0.11 -0.8 3,883,109 + Psest_3715 0.11 -0.7 3,883,110 - Psest_3715 0.12 +0.4 3,883,110 - Psest_3715 0.12 +0.1 3,883,110 - Psest_3715 0.12 +0.6 3,883,110 - Psest_3715 0.12 -0.3 3,883,235 + Psest_3715 0.18 +0.1 3,883,235 + Psest_3715 0.18 -1.0 3,883,235 + Psest_3715 0.18 -2.8 3,883,236 - Psest_3715 0.18 -1.6 3,883,236 - Psest_3715 0.18 -0.0 3,883,236 - Psest_3715 0.18 -0.8 3,883,236 - Psest_3715 0.18 -2.1 3,883,236 - Psest_3715 0.18 +0.4 3,883,244 + Psest_3715 0.18 -0.2 3,883,244 + Psest_3715 0.18 -0.3 3,883,244 + Psest_3715 0.18 +0.2 3,883,245 - Psest_3715 0.18 +1.2 3,883,245 - Psest_3715 0.18 +1.0 3,883,245 - Psest_3715 0.18 -0.3 3,883,245 - Psest_3715 0.18 +0.3 3,883,245 - Psest_3715 0.18 +0.2 3,883,392 - Psest_3715 0.25 -2.0 3,883,392 - Psest_3715 0.25 -0.7 3,883,392 - Psest_3715 0.25 -1.9 3,883,404 + Psest_3715 0.26 -0.1 3,883,405 - Psest_3715 0.26 -0.1 3,883,405 - Psest_3715 0.26 -0.1 3,883,405 - Psest_3715 0.26 +0.7 3,883,627 - Psest_3715 0.36 +0.7 3,883,647 + Psest_3715 0.37 -0.5 3,883,648 - Psest_3715 0.37 +0.1 3,883,648 - Psest_3715 0.37 +0.2 3,883,696 + Psest_3715 0.40 +0.8 3,883,706 + Psest_3715 0.40 +0.5 3,883,706 + Psest_3715 0.40 +0.1 3,883,706 + Psest_3715 0.40 -0.5 3,883,706 + Psest_3715 0.40 -0.2 3,883,706 + Psest_3715 0.40 +1.7 3,883,706 + Psest_3715 0.40 -0.0 3,883,706 + Psest_3715 0.40 -1.3 3,883,706 + Psest_3715 0.40 -0.7 3,883,707 - Psest_3715 0.40 -0.2 3,883,707 - Psest_3715 0.40 -0.5 3,883,707 - Psest_3715 0.40 +0.0 3,883,733 + Psest_3715 0.41 -0.3 3,883,733 + Psest_3715 0.41 -0.6 3,883,734 - Psest_3715 0.41 -0.2 3,883,763 + Psest_3715 0.43 -2.0 3,883,810 + Psest_3715 0.45 +0.5 3,883,810 + Psest_3715 0.45 -0.6 3,883,811 - Psest_3715 0.45 -1.6 3,883,811 - Psest_3715 0.45 -1.9 3,883,815 - Psest_3715 0.45 -1.5
Or see this region's nucleotide sequence