Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2139

Experiment: Def Chlorate 40 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2138 and Psest_2139 overlap by 4 nucleotidesPsest_2139 and Psest_2140 are separated by 28 nucleotides Psest_2138: Psest_2138 - RND family efflux transporter, MFP subunit, at 2,275,497 to 2,276,738 _2138 Psest_2139: Psest_2139 - Cation/multidrug efflux pump, at 2,276,735 to 2,279,815 _2139 Psest_2140: Psest_2140 - Cation/multidrug efflux pump, at 2,279,844 to 2,282,948 _2140 Position (kb) 2276 2277 2278 2279 2280Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2275.851 kb on + strand, within Psest_2138at 2275.851 kb on + strand, within Psest_2138at 2275.851 kb on + strand, within Psest_2138at 2275.851 kb on + strand, within Psest_2138at 2275.852 kb on - strand, within Psest_2138at 2276.500 kb on - strand, within Psest_2138at 2277.119 kb on + strand, within Psest_2139at 2277.119 kb on + strand, within Psest_2139at 2277.119 kb on + strand, within Psest_2139at 2277.323 kb on + strand, within Psest_2139at 2277.323 kb on + strand, within Psest_2139at 2277.735 kb on + strand, within Psest_2139at 2277.735 kb on + strand, within Psest_2139at 2277.735 kb on + strand, within Psest_2139at 2277.736 kb on - strand, within Psest_2139at 2277.736 kb on - strand, within Psest_2139at 2277.866 kb on + strand, within Psest_2139at 2277.866 kb on + strand, within Psest_2139at 2277.866 kb on + strand, within Psest_2139at 2277.866 kb on + strand, within Psest_2139at 2277.866 kb on + strand, within Psest_2139at 2277.867 kb on - strand, within Psest_2139at 2277.867 kb on - strand, within Psest_2139at 2277.867 kb on - strand, within Psest_2139at 2277.867 kb on - strand, within Psest_2139at 2277.867 kb on - strand, within Psest_2139at 2278.033 kb on + strand, within Psest_2139at 2278.033 kb on + strand, within Psest_2139at 2278.033 kb on + strand, within Psest_2139at 2278.033 kb on + strand, within Psest_2139at 2278.084 kb on - strand, within Psest_2139at 2278.349 kb on + strand, within Psest_2139at 2278.511 kb on + strand, within Psest_2139at 2278.511 kb on + strand, within Psest_2139at 2278.512 kb on - strand, within Psest_2139at 2278.512 kb on - strand, within Psest_2139at 2278.658 kb on + strand, within Psest_2139at 2278.844 kb on + strand, within Psest_2139at 2278.845 kb on - strand, within Psest_2139at 2278.845 kb on - strand, within Psest_2139at 2278.914 kb on - strand, within Psest_2139at 2279.321 kb on + strand, within Psest_2139at 2279.321 kb on + strand, within Psest_2139at 2279.321 kb on + strand, within Psest_2139at 2279.321 kb on + strand, within Psest_2139at 2279.321 kb on + strand, within Psest_2139at 2279.321 kb on + strand, within Psest_2139at 2279.321 kb on + strand, within Psest_2139at 2279.321 kb on + strand, within Psest_2139at 2279.321 kb on + strand, within Psest_2139at 2279.321 kb on + strand, within Psest_2139at 2279.321 kb on + strand, within Psest_2139at 2279.321 kb on + strand, within Psest_2139at 2279.322 kb on - strand, within Psest_2139at 2279.322 kb on - strand, within Psest_2139at 2279.322 kb on - strand, within Psest_2139at 2279.322 kb on - strand, within Psest_2139at 2279.322 kb on - strand, within Psest_2139at 2279.322 kb on - strand, within Psest_2139at 2279.342 kb on + strand, within Psest_2139at 2279.351 kb on + strand, within Psest_2139at 2279.351 kb on + strand, within Psest_2139at 2279.351 kb on + strand, within Psest_2139at 2279.351 kb on + strand, within Psest_2139at 2279.351 kb on + strand, within Psest_2139at 2279.351 kb on + strand, within Psest_2139at 2279.351 kb on + strand, within Psest_2139at 2279.351 kb on + strand, within Psest_2139at 2279.352 kb on - strand, within Psest_2139at 2279.352 kb on - strand, within Psest_2139at 2279.352 kb on - strand, within Psest_2139at 2279.744 kb on + strandat 2279.865 kb on - strandat 2280.228 kb on + strand, within Psest_2140at 2280.306 kb on + strand, within Psest_2140at 2280.432 kb on + strand, within Psest_2140at 2280.564 kb on + strand, within Psest_2140at 2280.565 kb on - strand, within Psest_2140

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Chlorate 40 mM
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2,275,851 + Psest_2138 0.29 +0.0
2,275,851 + Psest_2138 0.29 +1.0
2,275,851 + Psest_2138 0.29 -1.0
2,275,851 + Psest_2138 0.29 -0.0
2,275,852 - Psest_2138 0.29 -1.1
2,276,500 - Psest_2138 0.81 -0.2
2,277,119 + Psest_2139 0.12 -0.2
2,277,119 + Psest_2139 0.12 -0.6
2,277,119 + Psest_2139 0.12 -0.4
2,277,323 + Psest_2139 0.19 -1.4
2,277,323 + Psest_2139 0.19 +0.3
2,277,735 + Psest_2139 0.32 -0.3
2,277,735 + Psest_2139 0.32 -0.7
2,277,735 + Psest_2139 0.32 +0.3
2,277,736 - Psest_2139 0.32 +0.3
2,277,736 - Psest_2139 0.32 -0.6
2,277,866 + Psest_2139 0.37 +1.0
2,277,866 + Psest_2139 0.37 -1.1
2,277,866 + Psest_2139 0.37 +0.9
2,277,866 + Psest_2139 0.37 -0.6
2,277,866 + Psest_2139 0.37 -1.2
2,277,867 - Psest_2139 0.37 -1.1
2,277,867 - Psest_2139 0.37 -0.2
2,277,867 - Psest_2139 0.37 +0.4
2,277,867 - Psest_2139 0.37 -2.0
2,277,867 - Psest_2139 0.37 -1.0
2,278,033 + Psest_2139 0.42 +0.1
2,278,033 + Psest_2139 0.42 -1.0
2,278,033 + Psest_2139 0.42 -1.7
2,278,033 + Psest_2139 0.42 -0.1
2,278,084 - Psest_2139 0.44 +0.2
2,278,349 + Psest_2139 0.52 +1.0
2,278,511 + Psest_2139 0.58 -0.3
2,278,511 + Psest_2139 0.58 +0.9
2,278,512 - Psest_2139 0.58 +1.4
2,278,512 - Psest_2139 0.58 +0.5
2,278,658 + Psest_2139 0.62 -0.5
2,278,844 + Psest_2139 0.68 -1.3
2,278,845 - Psest_2139 0.68 +0.4
2,278,845 - Psest_2139 0.68 +0.0
2,278,914 - Psest_2139 0.71 +0.2
2,279,321 + Psest_2139 0.84 -0.2
2,279,321 + Psest_2139 0.84 -1.5
2,279,321 + Psest_2139 0.84 -0.2
2,279,321 + Psest_2139 0.84 -0.8
2,279,321 + Psest_2139 0.84 +0.6
2,279,321 + Psest_2139 0.84 -0.4
2,279,321 + Psest_2139 0.84 -0.4
2,279,321 + Psest_2139 0.84 +1.2
2,279,321 + Psest_2139 0.84 +0.3
2,279,321 + Psest_2139 0.84 +3.2
2,279,321 + Psest_2139 0.84 +1.1
2,279,321 + Psest_2139 0.84 +0.8
2,279,322 - Psest_2139 0.84 +0.2
2,279,322 - Psest_2139 0.84 +0.3
2,279,322 - Psest_2139 0.84 -1.4
2,279,322 - Psest_2139 0.84 +0.2
2,279,322 - Psest_2139 0.84 +0.1
2,279,322 - Psest_2139 0.84 +0.0
2,279,342 + Psest_2139 0.85 -0.4
2,279,351 + Psest_2139 0.85 +0.3
2,279,351 + Psest_2139 0.85 +0.4
2,279,351 + Psest_2139 0.85 -0.5
2,279,351 + Psest_2139 0.85 -0.2
2,279,351 + Psest_2139 0.85 -1.0
2,279,351 + Psest_2139 0.85 -0.1
2,279,351 + Psest_2139 0.85 +0.6
2,279,351 + Psest_2139 0.85 +0.6
2,279,352 - Psest_2139 0.85 -0.4
2,279,352 - Psest_2139 0.85 +0.8
2,279,352 - Psest_2139 0.85 +0.6
2,279,744 + +0.9
2,279,865 - +0.6
2,280,228 + Psest_2140 0.12 +1.0
2,280,306 + Psest_2140 0.15 -0.0
2,280,432 + Psest_2140 0.19 +1.3
2,280,564 + Psest_2140 0.23 +0.9
2,280,565 - Psest_2140 0.23 -1.2

Or see this region's nucleotide sequence