Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2095

Experiment: Def Chlorate 40 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2094 and Psest_2095 are separated by 22 nucleotidesPsest_2095 and Psest_2096 are separated by 330 nucleotidesPsest_2096 and Psest_2097 are separated by 43 nucleotides Psest_2094: Psest_2094 - Predicted Fe-S-cluster redox enzyme, at 2,221,786 to 2,222,826 _2094 Psest_2095: Psest_2095 - Arabinose efflux permease, at 2,222,849 to 2,223,997 _2095 Psest_2096: Psest_2096 - Domain of unknown function (DUF1883)., at 2,224,328 to 2,224,627 _2096 Psest_2097: Psest_2097 - EamA-like transporter family., at 2,224,671 to 2,225,648 _2097 Position (kb) 2222 2223 2224Strain fitness (log2 ratio) -2 -1 0 1 2at 2221.920 kb on - strand, within Psest_2094at 2221.986 kb on - strand, within Psest_2094at 2221.986 kb on - strand, within Psest_2094at 2222.010 kb on - strand, within Psest_2094at 2222.010 kb on - strand, within Psest_2094at 2222.087 kb on + strand, within Psest_2094at 2222.458 kb on + strand, within Psest_2094at 2222.458 kb on + strand, within Psest_2094at 2222.458 kb on + strand, within Psest_2094at 2222.458 kb on + strand, within Psest_2094at 2222.458 kb on + strand, within Psest_2094at 2222.459 kb on - strand, within Psest_2094at 2222.459 kb on - strand, within Psest_2094at 2222.459 kb on - strand, within Psest_2094at 2222.840 kb on + strandat 2223.342 kb on + strand, within Psest_2095at 2223.343 kb on - strand, within Psest_2095at 2223.343 kb on - strand, within Psest_2095at 2223.365 kb on + strand, within Psest_2095at 2223.366 kb on - strand, within Psest_2095at 2223.366 kb on - strand, within Psest_2095at 2223.531 kb on - strand, within Psest_2095at 2223.561 kb on + strand, within Psest_2095at 2223.561 kb on + strand, within Psest_2095at 2223.561 kb on + strand, within Psest_2095at 2223.561 kb on + strand, within Psest_2095at 2223.561 kb on + strand, within Psest_2095at 2223.561 kb on + strand, within Psest_2095at 2223.561 kb on + strand, within Psest_2095at 2223.561 kb on + strand, within Psest_2095at 2223.562 kb on - strand, within Psest_2095at 2223.562 kb on - strand, within Psest_2095at 2223.562 kb on - strand, within Psest_2095at 2223.562 kb on - strand, within Psest_2095at 2223.562 kb on - strand, within Psest_2095at 2223.745 kb on + strand, within Psest_2095at 2223.882 kb on + strand, within Psest_2095at 2223.882 kb on + strand, within Psest_2095at 2223.882 kb on + strand, within Psest_2095at 2223.882 kb on + strand, within Psest_2095at 2223.882 kb on + strand, within Psest_2095at 2223.883 kb on - strandat 2223.883 kb on - strandat 2224.185 kb on + strandat 2224.284 kb on + strandat 2224.338 kb on + strandat 2224.338 kb on + strandat 2224.338 kb on + strandat 2224.338 kb on + strandat 2224.339 kb on - strandat 2224.460 kb on + strand, within Psest_2096at 2224.461 kb on - strand, within Psest_2096at 2224.461 kb on - strand, within Psest_2096at 2224.461 kb on - strand, within Psest_2096at 2224.626 kb on - strandat 2224.956 kb on + strand, within Psest_2097at 2224.972 kb on + strand, within Psest_2097

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Chlorate 40 mM
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2,221,920 - Psest_2094 0.13 -0.6
2,221,986 - Psest_2094 0.19 +0.9
2,221,986 - Psest_2094 0.19 -1.3
2,222,010 - Psest_2094 0.22 +0.9
2,222,010 - Psest_2094 0.22 -2.7
2,222,087 + Psest_2094 0.29 -0.7
2,222,458 + Psest_2094 0.65 -0.4
2,222,458 + Psest_2094 0.65 -0.1
2,222,458 + Psest_2094 0.65 +0.4
2,222,458 + Psest_2094 0.65 +0.5
2,222,458 + Psest_2094 0.65 -0.5
2,222,459 - Psest_2094 0.65 +0.8
2,222,459 - Psest_2094 0.65 +0.5
2,222,459 - Psest_2094 0.65 -0.1
2,222,840 + -1.2
2,223,342 + Psest_2095 0.43 +0.0
2,223,343 - Psest_2095 0.43 -1.0
2,223,343 - Psest_2095 0.43 -1.0
2,223,365 + Psest_2095 0.45 -0.1
2,223,366 - Psest_2095 0.45 -0.7
2,223,366 - Psest_2095 0.45 -0.4
2,223,531 - Psest_2095 0.59 -1.0
2,223,561 + Psest_2095 0.62 +0.0
2,223,561 + Psest_2095 0.62 -0.5
2,223,561 + Psest_2095 0.62 -1.4
2,223,561 + Psest_2095 0.62 +0.4
2,223,561 + Psest_2095 0.62 -0.8
2,223,561 + Psest_2095 0.62 -0.9
2,223,561 + Psest_2095 0.62 -0.2
2,223,561 + Psest_2095 0.62 -0.1
2,223,562 - Psest_2095 0.62 -0.5
2,223,562 - Psest_2095 0.62 +1.0
2,223,562 - Psest_2095 0.62 -1.3
2,223,562 - Psest_2095 0.62 -0.9
2,223,562 - Psest_2095 0.62 -0.1
2,223,745 + Psest_2095 0.78 +2.3
2,223,882 + Psest_2095 0.90 -1.4
2,223,882 + Psest_2095 0.90 -0.5
2,223,882 + Psest_2095 0.90 -0.4
2,223,882 + Psest_2095 0.90 -0.1
2,223,882 + Psest_2095 0.90 -0.7
2,223,883 - +0.1
2,223,883 - +0.3
2,224,185 + -0.6
2,224,284 + -0.6
2,224,338 + -0.4
2,224,338 + -0.6
2,224,338 + -2.1
2,224,338 + -1.0
2,224,339 - -0.2
2,224,460 + Psest_2096 0.44 +0.8
2,224,461 - Psest_2096 0.44 +0.4
2,224,461 - Psest_2096 0.44 -0.7
2,224,461 - Psest_2096 0.44 +0.9
2,224,626 - +0.3
2,224,956 + Psest_2097 0.29 +0.4
2,224,972 + Psest_2097 0.31 -0.4

Or see this region's nucleotide sequence