Experiment: Def Chlorate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2094 and Psest_2095 are separated by 22 nucleotides Psest_2095 and Psest_2096 are separated by 330 nucleotides Psest_2096 and Psest_2097 are separated by 43 nucleotides
Psest_2094: Psest_2094 - Predicted Fe-S-cluster redox enzyme, at 2,221,786 to 2,222,826
_2094
Psest_2095: Psest_2095 - Arabinose efflux permease, at 2,222,849 to 2,223,997
_2095
Psest_2096: Psest_2096 - Domain of unknown function (DUF1883)., at 2,224,328 to 2,224,627
_2096
Psest_2097: Psest_2097 - EamA-like transporter family., at 2,224,671 to 2,225,648
_2097
Position (kb)
2222
2223
2224 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2221.920 kb on - strand, within Psest_2094 at 2221.986 kb on - strand, within Psest_2094 at 2221.986 kb on - strand, within Psest_2094 at 2222.010 kb on - strand, within Psest_2094 at 2222.010 kb on - strand, within Psest_2094 at 2222.087 kb on + strand, within Psest_2094 at 2222.458 kb on + strand, within Psest_2094 at 2222.458 kb on + strand, within Psest_2094 at 2222.458 kb on + strand, within Psest_2094 at 2222.458 kb on + strand, within Psest_2094 at 2222.458 kb on + strand, within Psest_2094 at 2222.459 kb on - strand, within Psest_2094 at 2222.459 kb on - strand, within Psest_2094 at 2222.459 kb on - strand, within Psest_2094 at 2222.840 kb on + strand at 2223.342 kb on + strand, within Psest_2095 at 2223.343 kb on - strand, within Psest_2095 at 2223.343 kb on - strand, within Psest_2095 at 2223.365 kb on + strand, within Psest_2095 at 2223.366 kb on - strand, within Psest_2095 at 2223.366 kb on - strand, within Psest_2095 at 2223.531 kb on - strand, within Psest_2095 at 2223.561 kb on + strand, within Psest_2095 at 2223.561 kb on + strand, within Psest_2095 at 2223.561 kb on + strand, within Psest_2095 at 2223.561 kb on + strand, within Psest_2095 at 2223.561 kb on + strand, within Psest_2095 at 2223.561 kb on + strand, within Psest_2095 at 2223.561 kb on + strand, within Psest_2095 at 2223.561 kb on + strand, within Psest_2095 at 2223.562 kb on - strand, within Psest_2095 at 2223.562 kb on - strand, within Psest_2095 at 2223.562 kb on - strand, within Psest_2095 at 2223.562 kb on - strand, within Psest_2095 at 2223.562 kb on - strand, within Psest_2095 at 2223.745 kb on + strand, within Psest_2095 at 2223.882 kb on + strand, within Psest_2095 at 2223.882 kb on + strand, within Psest_2095 at 2223.882 kb on + strand, within Psest_2095 at 2223.882 kb on + strand, within Psest_2095 at 2223.882 kb on + strand, within Psest_2095 at 2223.883 kb on - strand at 2223.883 kb on - strand at 2224.185 kb on + strand at 2224.284 kb on + strand at 2224.338 kb on + strand at 2224.338 kb on + strand at 2224.338 kb on + strand at 2224.338 kb on + strand at 2224.339 kb on - strand at 2224.460 kb on + strand, within Psest_2096 at 2224.461 kb on - strand, within Psest_2096 at 2224.461 kb on - strand, within Psest_2096 at 2224.461 kb on - strand, within Psest_2096 at 2224.626 kb on - strand at 2224.956 kb on + strand, within Psest_2097 at 2224.972 kb on + strand, within Psest_2097
Per-strain Table
Position Strand Gene LocusTag Fraction Def Chlorate 40 mM remove 2,221,920 - Psest_2094 0.13 -0.6 2,221,986 - Psest_2094 0.19 +0.9 2,221,986 - Psest_2094 0.19 -1.3 2,222,010 - Psest_2094 0.22 +0.9 2,222,010 - Psest_2094 0.22 -2.7 2,222,087 + Psest_2094 0.29 -0.7 2,222,458 + Psest_2094 0.65 -0.4 2,222,458 + Psest_2094 0.65 -0.1 2,222,458 + Psest_2094 0.65 +0.4 2,222,458 + Psest_2094 0.65 +0.5 2,222,458 + Psest_2094 0.65 -0.5 2,222,459 - Psest_2094 0.65 +0.8 2,222,459 - Psest_2094 0.65 +0.5 2,222,459 - Psest_2094 0.65 -0.1 2,222,840 + -1.2 2,223,342 + Psest_2095 0.43 +0.0 2,223,343 - Psest_2095 0.43 -1.0 2,223,343 - Psest_2095 0.43 -1.0 2,223,365 + Psest_2095 0.45 -0.1 2,223,366 - Psest_2095 0.45 -0.7 2,223,366 - Psest_2095 0.45 -0.4 2,223,531 - Psest_2095 0.59 -1.0 2,223,561 + Psest_2095 0.62 +0.0 2,223,561 + Psest_2095 0.62 -0.5 2,223,561 + Psest_2095 0.62 -1.4 2,223,561 + Psest_2095 0.62 +0.4 2,223,561 + Psest_2095 0.62 -0.8 2,223,561 + Psest_2095 0.62 -0.9 2,223,561 + Psest_2095 0.62 -0.2 2,223,561 + Psest_2095 0.62 -0.1 2,223,562 - Psest_2095 0.62 -0.5 2,223,562 - Psest_2095 0.62 +1.0 2,223,562 - Psest_2095 0.62 -1.3 2,223,562 - Psest_2095 0.62 -0.9 2,223,562 - Psest_2095 0.62 -0.1 2,223,745 + Psest_2095 0.78 +2.3 2,223,882 + Psest_2095 0.90 -1.4 2,223,882 + Psest_2095 0.90 -0.5 2,223,882 + Psest_2095 0.90 -0.4 2,223,882 + Psest_2095 0.90 -0.1 2,223,882 + Psest_2095 0.90 -0.7 2,223,883 - +0.1 2,223,883 - +0.3 2,224,185 + -0.6 2,224,284 + -0.6 2,224,338 + -0.4 2,224,338 + -0.6 2,224,338 + -2.1 2,224,338 + -1.0 2,224,339 - -0.2 2,224,460 + Psest_2096 0.44 +0.8 2,224,461 - Psest_2096 0.44 +0.4 2,224,461 - Psest_2096 0.44 -0.7 2,224,461 - Psest_2096 0.44 +0.9 2,224,626 - +0.3 2,224,956 + Psest_2097 0.29 +0.4 2,224,972 + Psest_2097 0.31 -0.4
Or see this region's nucleotide sequence