Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1984

Experiment: Def Chlorate 40 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1983 and Psest_1984 overlap by 1 nucleotidesPsest_1984 and Psest_1985 are separated by 83 nucleotides Psest_1983: Psest_1983 - phosphoserine aminotransferase, at 2,099,196 to 2,100,281 _1983 Psest_1984: Psest_1984 - chorismate mutase domain of proteobacterial P-protein, clade 2, at 2,100,281 to 2,101,378 _1984 Psest_1985: Psest_1985 - histidinol-phosphate aminotransferase, at 2,101,462 to 2,102,571 _1985 Position (kb) 2100 2101 2102Strain fitness (log2 ratio) -1 0 1 2 3at 2101.457 kb on + strandat 2101.457 kb on + strandat 2101.457 kb on + strandat 2101.457 kb on + strandat 2101.457 kb on + strandat 2101.461 kb on + strandat 2101.516 kb on + strandat 2101.520 kb on + strandat 2101.625 kb on + strand, within Psest_1985at 2101.625 kb on + strand, within Psest_1985at 2102.059 kb on + strand, within Psest_1985at 2102.059 kb on + strand, within Psest_1985at 2102.059 kb on + strand, within Psest_1985at 2102.059 kb on + strand, within Psest_1985at 2102.059 kb on + strand, within Psest_1985at 2102.059 kb on + strand, within Psest_1985at 2102.059 kb on + strand, within Psest_1985at 2102.182 kb on + strand, within Psest_1985at 2102.213 kb on + strand, within Psest_1985at 2102.247 kb on + strand, within Psest_1985at 2102.293 kb on + strand, within Psest_1985

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Chlorate 40 mM
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2,101,457 + +0.4
2,101,457 + -0.3
2,101,457 + +1.0
2,101,457 + +0.4
2,101,457 + -0.6
2,101,461 + +0.2
2,101,516 + -1.6
2,101,520 + -0.6
2,101,625 + Psest_1985 0.15 +0.3
2,101,625 + Psest_1985 0.15 -0.6
2,102,059 + Psest_1985 0.54 +0.0
2,102,059 + Psest_1985 0.54 -1.0
2,102,059 + Psest_1985 0.54 -0.3
2,102,059 + Psest_1985 0.54 +0.9
2,102,059 + Psest_1985 0.54 +1.9
2,102,059 + Psest_1985 0.54 +1.2
2,102,059 + Psest_1985 0.54 +0.1
2,102,182 + Psest_1985 0.65 -0.3
2,102,213 + Psest_1985 0.68 -0.8
2,102,247 + Psest_1985 0.71 +3.0
2,102,293 + Psest_1985 0.75 -0.4

Or see this region's nucleotide sequence