Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1757

Experiment: Def Chlorate 40 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1755 and Psest_1756 are separated by 92 nucleotidesPsest_1756 and Psest_1757 overlap by 4 nucleotidesPsest_1757 and Psest_1758 overlap by 4 nucleotidesPsest_1758 and Psest_1759 overlap by 4 nucleotides Psest_1755: Psest_1755 - heme exporter protein CcmB, at 1,858,186 to 1,858,857 _1755 Psest_1756: Psest_1756 - heme exporter protein CcmC, at 1,858,950 to 1,859,705 _1756 Psest_1757: Psest_1757 - heme exporter protein CcmD, at 1,859,702 to 1,859,878 _1757 Psest_1758: Psest_1758 - Cytochrome c-type biogenesis protein CcmE, at 1,859,875 to 1,860,342 _1758 Psest_1759: Psest_1759 - c-type cytochrome biogenesis protein CcmF, at 1,860,339 to 1,862,312 _1759 Position (kb) 1859 1860Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1858.896 kb on + strandat 1858.896 kb on + strandat 1858.896 kb on + strandat 1860.331 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Chlorate 40 mM
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1,858,896 + -1.1
1,858,896 + -0.8
1,858,896 + +3.1
1,860,331 + -3.4

Or see this region's nucleotide sequence