Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1484

Experiment: Def Chlorate 40 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1481 and Psest_1482 are separated by 139 nucleotidesPsest_1482 and Psest_1483 are separated by 2 nucleotidesPsest_1483 and Psest_1484 are separated by 223 nucleotidesPsest_1484 and Psest_1485 are separated by 10 nucleotidesPsest_1485 and Psest_1486 are separated by 5 nucleotides Psest_1481: Psest_1481 - Predicted membrane protein, at 1,584,611 to 1,585,843 _1481 Psest_1482: Psest_1482 - hypothetical protein, at 1,585,983 to 1,586,180 _1482 Psest_1483: Psest_1483 - hypothetical protein, at 1,586,183 to 1,586,575 _1483 Psest_1484: Psest_1484 - Thiol-disulfide isomerase and thioredoxins, at 1,586,799 to 1,587,257 _1484 Psest_1485: Psest_1485 - Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains), at 1,587,268 to 1,587,840 _1485 Psest_1486: Psest_1486 - hypothetical protein, at 1,587,846 to 1,588,778 _1486 Position (kb) 1586 1587 1588Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1585.956 kb on + strandat 1585.956 kb on + strandat 1585.957 kb on - strandat 1585.957 kb on - strandat 1585.957 kb on - strandat 1585.957 kb on - strandat 1586.008 kb on + strand, within Psest_1482at 1586.008 kb on + strand, within Psest_1482at 1586.008 kb on + strand, within Psest_1482at 1586.008 kb on + strand, within Psest_1482at 1586.008 kb on + strand, within Psest_1482at 1586.008 kb on + strand, within Psest_1482at 1586.008 kb on + strand, within Psest_1482at 1586.008 kb on + strand, within Psest_1482at 1586.008 kb on + strand, within Psest_1482at 1586.009 kb on - strand, within Psest_1482at 1586.009 kb on - strand, within Psest_1482at 1586.009 kb on - strand, within Psest_1482at 1586.009 kb on - strand, within Psest_1482at 1586.009 kb on - strand, within Psest_1482at 1586.009 kb on - strand, within Psest_1482at 1586.009 kb on - strand, within Psest_1482at 1586.009 kb on - strand, within Psest_1482at 1586.009 kb on - strand, within Psest_1482at 1586.010 kb on + strand, within Psest_1482at 1586.010 kb on + strand, within Psest_1482at 1586.010 kb on + strand, within Psest_1482at 1586.010 kb on + strand, within Psest_1482at 1586.010 kb on + strand, within Psest_1482at 1586.010 kb on + strand, within Psest_1482at 1586.010 kb on + strand, within Psest_1482at 1586.010 kb on + strand, within Psest_1482at 1586.010 kb on + strand, within Psest_1482at 1586.010 kb on + strand, within Psest_1482at 1586.010 kb on + strand, within Psest_1482at 1586.011 kb on - strand, within Psest_1482at 1586.011 kb on - strand, within Psest_1482at 1586.012 kb on + strand, within Psest_1482at 1586.012 kb on + strand, within Psest_1482at 1586.012 kb on + strand, within Psest_1482at 1586.012 kb on + strand, within Psest_1482at 1586.012 kb on + strand, within Psest_1482at 1586.012 kb on + strand, within Psest_1482at 1586.012 kb on + strand, within Psest_1482at 1586.012 kb on + strand, within Psest_1482at 1586.012 kb on + strand, within Psest_1482at 1586.012 kb on + strand, within Psest_1482at 1586.012 kb on + strand, within Psest_1482at 1586.012 kb on + strand, within Psest_1482at 1586.012 kb on + strand, within Psest_1482at 1586.012 kb on + strand, within Psest_1482at 1586.012 kb on + strand, within Psest_1482at 1586.012 kb on + strand, within Psest_1482at 1586.012 kb on + strand, within Psest_1482at 1586.012 kb on + strand, within Psest_1482at 1586.012 kb on + strand, within Psest_1482at 1586.013 kb on - strand, within Psest_1482at 1586.013 kb on - strand, within Psest_1482at 1586.013 kb on - strand, within Psest_1482at 1586.153 kb on + strand, within Psest_1482at 1586.192 kb on + strandat 1586.285 kb on + strand, within Psest_1483at 1586.285 kb on + strand, within Psest_1483at 1586.286 kb on - strand, within Psest_1483at 1586.286 kb on - strand, within Psest_1483at 1586.337 kb on - strand, within Psest_1483at 1586.342 kb on + strand, within Psest_1483at 1586.342 kb on + strand, within Psest_1483at 1586.342 kb on + strand, within Psest_1483at 1586.342 kb on + strand, within Psest_1483at 1586.410 kb on - strand, within Psest_1483at 1586.496 kb on + strand, within Psest_1483at 1586.496 kb on + strand, within Psest_1483at 1586.496 kb on + strand, within Psest_1483at 1586.497 kb on - strand, within Psest_1483at 1586.611 kb on + strandat 1586.612 kb on - strandat 1586.613 kb on + strandat 1586.613 kb on + strandat 1586.613 kb on + strandat 1586.613 kb on + strandat 1586.613 kb on + strandat 1586.613 kb on + strandat 1586.614 kb on - strandat 1586.614 kb on - strandat 1586.614 kb on - strandat 1586.614 kb on - strandat 1586.798 kb on + strandat 1586.798 kb on + strandat 1586.798 kb on + strandat 1586.799 kb on - strandat 1586.918 kb on + strand, within Psest_1484at 1586.918 kb on + strand, within Psest_1484at 1586.919 kb on - strand, within Psest_1484at 1586.919 kb on - strand, within Psest_1484at 1586.919 kb on - strand, within Psest_1484at 1586.937 kb on + strand, within Psest_1484at 1586.938 kb on - strand, within Psest_1484at 1586.938 kb on - strand, within Psest_1484at 1586.938 kb on - strand, within Psest_1484at 1586.967 kb on - strand, within Psest_1484at 1586.984 kb on + strand, within Psest_1484at 1586.984 kb on + strand, within Psest_1484at 1586.984 kb on + strand, within Psest_1484at 1586.984 kb on + strand, within Psest_1484at 1586.984 kb on + strand, within Psest_1484at 1586.984 kb on + strand, within Psest_1484at 1586.985 kb on - strand, within Psest_1484at 1586.987 kb on + strand, within Psest_1484at 1586.987 kb on + strand, within Psest_1484at 1586.987 kb on + strand, within Psest_1484at 1586.996 kb on + strand, within Psest_1484at 1587.125 kb on + strand, within Psest_1484at 1587.159 kb on + strand, within Psest_1484at 1587.159 kb on + strand, within Psest_1484at 1587.159 kb on + strand, within Psest_1484at 1587.159 kb on + strand, within Psest_1484at 1587.159 kb on + strand, within Psest_1484at 1587.159 kb on + strand, within Psest_1484at 1587.159 kb on + strand, within Psest_1484at 1587.159 kb on + strand, within Psest_1484at 1587.160 kb on - strand, within Psest_1484at 1587.160 kb on - strand, within Psest_1484at 1587.160 kb on - strand, within Psest_1484at 1587.160 kb on - strand, within Psest_1484at 1587.160 kb on - strand, within Psest_1484at 1587.160 kb on - strand, within Psest_1484at 1587.160 kb on - strand, within Psest_1484at 1587.160 kb on - strand, within Psest_1484at 1587.160 kb on - strand, within Psest_1484at 1587.224 kb on - strandat 1587.255 kb on + strandat 1587.281 kb on + strandat 1587.392 kb on + strand, within Psest_1485at 1587.392 kb on + strand, within Psest_1485at 1587.393 kb on - strand, within Psest_1485at 1587.393 kb on - strand, within Psest_1485at 1587.395 kb on + strand, within Psest_1485at 1587.395 kb on + strand, within Psest_1485at 1587.395 kb on + strand, within Psest_1485at 1587.395 kb on + strand, within Psest_1485at 1587.395 kb on + strand, within Psest_1485at 1587.395 kb on + strand, within Psest_1485at 1587.395 kb on + strand, within Psest_1485at 1587.463 kb on + strand, within Psest_1485at 1587.651 kb on - strand, within Psest_1485at 1587.677 kb on - strand, within Psest_1485at 1587.677 kb on - strand, within Psest_1485

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Chlorate 40 mM
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1,585,956 + +0.9
1,585,956 + +0.3
1,585,957 - -0.1
1,585,957 - +0.0
1,585,957 - -0.0
1,585,957 - +0.3
1,586,008 + Psest_1482 0.13 +0.4
1,586,008 + Psest_1482 0.13 -0.7
1,586,008 + Psest_1482 0.13 +0.9
1,586,008 + Psest_1482 0.13 +0.1
1,586,008 + Psest_1482 0.13 +0.1
1,586,008 + Psest_1482 0.13 +0.3
1,586,008 + Psest_1482 0.13 +0.3
1,586,008 + Psest_1482 0.13 +0.2
1,586,008 + Psest_1482 0.13 +1.1
1,586,009 - Psest_1482 0.13 +0.1
1,586,009 - Psest_1482 0.13 -0.1
1,586,009 - Psest_1482 0.13 +0.5
1,586,009 - Psest_1482 0.13 +1.3
1,586,009 - Psest_1482 0.13 +0.3
1,586,009 - Psest_1482 0.13 +0.0
1,586,009 - Psest_1482 0.13 +0.2
1,586,009 - Psest_1482 0.13 +1.7
1,586,009 - Psest_1482 0.13 -0.0
1,586,010 + Psest_1482 0.14 +1.3
1,586,010 + Psest_1482 0.14 +0.8
1,586,010 + Psest_1482 0.14 +0.7
1,586,010 + Psest_1482 0.14 +0.4
1,586,010 + Psest_1482 0.14 -0.5
1,586,010 + Psest_1482 0.14 -0.3
1,586,010 + Psest_1482 0.14 +0.6
1,586,010 + Psest_1482 0.14 -1.1
1,586,010 + Psest_1482 0.14 +0.9
1,586,010 + Psest_1482 0.14 +1.5
1,586,010 + Psest_1482 0.14 +1.7
1,586,011 - Psest_1482 0.14 +0.2
1,586,011 - Psest_1482 0.14 +0.0
1,586,012 + Psest_1482 0.15 +0.6
1,586,012 + Psest_1482 0.15 -1.0
1,586,012 + Psest_1482 0.15 -0.6
1,586,012 + Psest_1482 0.15 +0.9
1,586,012 + Psest_1482 0.15 -0.0
1,586,012 + Psest_1482 0.15 +0.2
1,586,012 + Psest_1482 0.15 +0.9
1,586,012 + Psest_1482 0.15 -0.2
1,586,012 + Psest_1482 0.15 -0.6
1,586,012 + Psest_1482 0.15 +0.1
1,586,012 + Psest_1482 0.15 -0.7
1,586,012 + Psest_1482 0.15 +0.5
1,586,012 + Psest_1482 0.15 -0.5
1,586,012 + Psest_1482 0.15 +0.8
1,586,012 + Psest_1482 0.15 +0.2
1,586,012 + Psest_1482 0.15 +1.4
1,586,012 + Psest_1482 0.15 +0.5
1,586,012 + Psest_1482 0.15 -1.4
1,586,012 + Psest_1482 0.15 +0.9
1,586,013 - Psest_1482 0.15 +0.4
1,586,013 - Psest_1482 0.15 +1.3
1,586,013 - Psest_1482 0.15 +0.1
1,586,153 + Psest_1482 0.86 -0.2
1,586,192 + +0.8
1,586,285 + Psest_1483 0.26 -0.5
1,586,285 + Psest_1483 0.26 +1.9
1,586,286 - Psest_1483 0.26 +0.2
1,586,286 - Psest_1483 0.26 +0.5
1,586,337 - Psest_1483 0.39 -0.2
1,586,342 + Psest_1483 0.40 +1.0
1,586,342 + Psest_1483 0.40 -1.1
1,586,342 + Psest_1483 0.40 -1.1
1,586,342 + Psest_1483 0.40 +1.1
1,586,410 - Psest_1483 0.58 -0.4
1,586,496 + Psest_1483 0.80 -1.1
1,586,496 + Psest_1483 0.80 +0.1
1,586,496 + Psest_1483 0.80 -0.2
1,586,497 - Psest_1483 0.80 +0.3
1,586,611 + -0.6
1,586,612 - +2.0
1,586,613 + +0.1
1,586,613 + +0.6
1,586,613 + -0.2
1,586,613 + -0.1
1,586,613 + +0.8
1,586,613 + -0.1
1,586,614 - -0.2
1,586,614 - +1.1
1,586,614 - +0.8
1,586,614 - +0.4
1,586,798 + +0.4
1,586,798 + -1.0
1,586,798 + -0.6
1,586,799 - -1.0
1,586,918 + Psest_1484 0.26 -1.6
1,586,918 + Psest_1484 0.26 -0.2
1,586,919 - Psest_1484 0.26 -2.2
1,586,919 - Psest_1484 0.26 -1.6
1,586,919 - Psest_1484 0.26 -1.2
1,586,937 + Psest_1484 0.30 -1.2
1,586,938 - Psest_1484 0.30 -3.2
1,586,938 - Psest_1484 0.30 -2.7
1,586,938 - Psest_1484 0.30 -3.2
1,586,967 - Psest_1484 0.37 -2.0
1,586,984 + Psest_1484 0.40 -1.5
1,586,984 + Psest_1484 0.40 -3.2
1,586,984 + Psest_1484 0.40 -1.6
1,586,984 + Psest_1484 0.40 -1.5
1,586,984 + Psest_1484 0.40 -1.6
1,586,984 + Psest_1484 0.40 -2.7
1,586,985 - Psest_1484 0.41 -1.3
1,586,987 + Psest_1484 0.41 -2.0
1,586,987 + Psest_1484 0.41 -3.6
1,586,987 + Psest_1484 0.41 -3.0
1,586,996 + Psest_1484 0.43 -1.5
1,587,125 + Psest_1484 0.71 -2.6
1,587,159 + Psest_1484 0.78 -2.1
1,587,159 + Psest_1484 0.78 -1.6
1,587,159 + Psest_1484 0.78 -2.6
1,587,159 + Psest_1484 0.78 -1.3
1,587,159 + Psest_1484 0.78 -2.9
1,587,159 + Psest_1484 0.78 -3.8
1,587,159 + Psest_1484 0.78 -2.9
1,587,159 + Psest_1484 0.78 -2.1
1,587,160 - Psest_1484 0.79 -2.3
1,587,160 - Psest_1484 0.79 -3.0
1,587,160 - Psest_1484 0.79 -2.0
1,587,160 - Psest_1484 0.79 -3.7
1,587,160 - Psest_1484 0.79 -3.1
1,587,160 - Psest_1484 0.79 -2.5
1,587,160 - Psest_1484 0.79 -2.4
1,587,160 - Psest_1484 0.79 -4.4
1,587,160 - Psest_1484 0.79 -4.1
1,587,224 - -2.0
1,587,255 + -1.2
1,587,281 + +0.1
1,587,392 + Psest_1485 0.22 -1.6
1,587,392 + Psest_1485 0.22 +0.4
1,587,393 - Psest_1485 0.22 +0.9
1,587,393 - Psest_1485 0.22 +0.4
1,587,395 + Psest_1485 0.22 -0.1
1,587,395 + Psest_1485 0.22 -0.0
1,587,395 + Psest_1485 0.22 +0.1
1,587,395 + Psest_1485 0.22 +0.4
1,587,395 + Psest_1485 0.22 +0.3
1,587,395 + Psest_1485 0.22 +0.3
1,587,395 + Psest_1485 0.22 +2.1
1,587,463 + Psest_1485 0.34 -0.7
1,587,651 - Psest_1485 0.67 +1.6
1,587,677 - Psest_1485 0.71 +0.2
1,587,677 - Psest_1485 0.71 -0.5

Or see this region's nucleotide sequence