Strain Fitness in Shewanella oneidensis MR-1 around SOA0141

Experiment: L-Threonine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSOA0140 and SOA0141 are separated by 8 nucleotidesSOA0141 and SOA0142 are separated by 398 nucleotides SOA0140: SOA0140 - hypothetical protein (NCBI ptt file), at 126,416 to 128,746 SOA0140 SOA0141: SOA0141 - hypothetical protein (NCBI ptt file), at 128,755 to 130,485 SOA0141 SOA0142: SOA0142 - ISSod13, transposase (NCBI ptt file), at 130,884 to 131,924 SOA0142 Position (kb) 128 129 130 131Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 127.766 kb on - strand, within SOA0140at 127.780 kb on + strand, within SOA0140at 127.788 kb on - strand, within SOA0140at 127.788 kb on - strand, within SOA0140at 127.788 kb on - strand, within SOA0140at 127.791 kb on - strand, within SOA0140at 127.791 kb on - strand, within SOA0140at 127.798 kb on + strand, within SOA0140at 127.876 kb on + strand, within SOA0140at 127.876 kb on + strand, within SOA0140at 127.876 kb on + strand, within SOA0140at 127.876 kb on + strand, within SOA0140at 127.876 kb on + strand, within SOA0140at 127.879 kb on - strand, within SOA0140at 127.882 kb on + strand, within SOA0140at 127.884 kb on - strand, within SOA0140at 127.884 kb on - strand, within SOA0140at 127.884 kb on - strand, within SOA0140at 127.884 kb on - strand, within SOA0140at 127.890 kb on - strand, within SOA0140at 127.892 kb on - strand, within SOA0140at 127.892 kb on - strand, within SOA0140at 127.892 kb on - strand, within SOA0140at 127.907 kb on - strand, within SOA0140at 127.907 kb on - strand, within SOA0140at 127.907 kb on - strand, within SOA0140at 127.912 kb on - strand, within SOA0140at 127.974 kb on + strand, within SOA0140at 128.000 kb on + strand, within SOA0140at 128.053 kb on + strand, within SOA0140at 128.058 kb on + strand, within SOA0140at 128.058 kb on + strand, within SOA0140at 128.058 kb on + strand, within SOA0140at 128.066 kb on - strand, within SOA0140at 128.066 kb on - strand, within SOA0140at 128.066 kb on - strand, within SOA0140at 128.106 kb on - strand, within SOA0140at 128.106 kb on - strand, within SOA0140at 128.197 kb on - strand, within SOA0140at 128.311 kb on + strand, within SOA0140at 128.334 kb on - strand, within SOA0140at 128.453 kb on + strand, within SOA0140at 128.453 kb on - strand, within SOA0140at 128.459 kb on - strand, within SOA0140at 128.461 kb on - strand, within SOA0140at 128.496 kb on + strand, within SOA0140at 128.496 kb on + strand, within SOA0140at 128.504 kb on - strand, within SOA0140at 128.504 kb on - strand, within SOA0140at 128.504 kb on - strand, within SOA0140at 128.504 kb on - strand, within SOA0140at 128.504 kb on - strand, within SOA0140at 128.506 kb on + strand, within SOA0140at 128.506 kb on + strand, within SOA0140at 128.511 kb on + strand, within SOA0140at 128.514 kb on - strandat 128.514 kb on - strandat 128.571 kb on + strandat 128.578 kb on - strandat 128.591 kb on - strandat 128.594 kb on + strandat 128.617 kb on + strandat 128.664 kb on - strandat 128.674 kb on + strandat 128.674 kb on + strandat 128.674 kb on + strandat 128.682 kb on - strandat 128.682 kb on - strandat 128.682 kb on - strandat 128.727 kb on + strandat 128.734 kb on + strandat 128.735 kb on - strandat 128.735 kb on - strandat 128.740 kb on + strandat 128.740 kb on + strandat 128.770 kb on - strandat 128.842 kb on - strandat 128.942 kb on + strand, within SOA0141at 128.942 kb on + strand, within SOA0141at 128.942 kb on + strand, within SOA0141at 128.942 kb on + strand, within SOA0141at 128.947 kb on + strand, within SOA0141at 128.947 kb on + strand, within SOA0141at 128.947 kb on + strand, within SOA0141at 128.947 kb on + strand, within SOA0141at 128.947 kb on + strand, within SOA0141at 128.947 kb on + strand, within SOA0141at 128.950 kb on + strand, within SOA0141at 128.950 kb on - strand, within SOA0141at 128.950 kb on - strand, within SOA0141at 128.952 kb on + strand, within SOA0141at 128.952 kb on + strand, within SOA0141at 128.952 kb on + strand, within SOA0141at 128.952 kb on + strand, within SOA0141at 128.952 kb on + strand, within SOA0141at 128.952 kb on + strand, within SOA0141at 128.952 kb on + strand, within SOA0141at 128.952 kb on + strand, within SOA0141at 128.952 kb on + strand, within SOA0141at 128.952 kb on + strand, within SOA0141at 128.952 kb on + strand, within SOA0141at 128.952 kb on + strand, within SOA0141at 128.952 kb on + strand, within SOA0141at 128.952 kb on + strand, within SOA0141at 128.952 kb on + strand, within SOA0141at 128.952 kb on + strand, within SOA0141at 128.952 kb on + strand, within SOA0141at 128.952 kb on + strand, within SOA0141at 128.952 kb on + strand, within SOA0141at 128.952 kb on + strand, within SOA0141at 128.952 kb on + strand, within SOA0141at 128.952 kb on + strand, within SOA0141at 128.952 kb on + strand, within SOA0141at 128.952 kb on + strand, within SOA0141at 128.952 kb on + strand, within SOA0141at 128.952 kb on + strand, within SOA0141at 128.952 kb on + strand, within SOA0141at 128.952 kb on + strand, within SOA0141at 128.952 kb on + strand, within SOA0141at 128.952 kb on + strand, within SOA0141at 128.952 kb on + strand, within SOA0141at 128.952 kb on + strand, within SOA0141at 128.955 kb on - strand, within SOA0141at 128.955 kb on - strand, within SOA0141at 128.955 kb on - strand, within SOA0141at 128.955 kb on - strand, within SOA0141at 128.957 kb on + strand, within SOA0141at 128.960 kb on - strand, within SOA0141at 128.960 kb on - strand, within SOA0141at 128.960 kb on - strand, within SOA0141at 128.960 kb on - strand, within SOA0141at 128.960 kb on - strand, within SOA0141at 128.960 kb on - strand, within SOA0141at 128.960 kb on - strand, within SOA0141at 128.960 kb on - strand, within SOA0141at 128.960 kb on - strand, within SOA0141at 128.960 kb on - strand, within SOA0141at 128.960 kb on - strand, within SOA0141at 128.960 kb on - strand, within SOA0141at 128.960 kb on - strand, within SOA0141at 128.960 kb on - strand, within SOA0141at 128.960 kb on - strand, within SOA0141at 128.960 kb on - strand, within SOA0141at 128.960 kb on - strand, within SOA0141at 128.960 kb on - strand, within SOA0141at 128.960 kb on - strand, within SOA0141at 128.960 kb on - strand, within SOA0141at 128.960 kb on - strand, within SOA0141at 128.960 kb on - strand, within SOA0141at 128.960 kb on - strand, within SOA0141at 128.960 kb on - strand, within SOA0141at 128.960 kb on - strand, within SOA0141at 128.960 kb on - strand, within SOA0141at 128.960 kb on - strand, within SOA0141at 128.960 kb on - strand, within SOA0141at 128.960 kb on - strandat 128.960 kb on - strand, within SOA0141at 128.960 kb on - strand, within SOA0141at 128.960 kb on - strand, within SOA0141at 128.960 kb on - strand, within SOA0141at 128.960 kb on - strand, within SOA0141at 128.960 kb on - strand, within SOA0141at 128.960 kb on - strand, within SOA0141at 128.960 kb on - strand, within SOA0141at 128.965 kb on - strand, within SOA0141at 128.985 kb on + strand, within SOA0141at 128.985 kb on + strand, within SOA0141at 128.993 kb on - strand, within SOA0141at 129.042 kb on + strand, within SOA0141at 129.042 kb on + strand, within SOA0141at 129.050 kb on - strand, within SOA0141at 129.118 kb on + strand, within SOA0141at 129.126 kb on - strand, within SOA0141at 129.133 kb on + strand, within SOA0141at 129.160 kb on - strand, within SOA0141at 129.165 kb on - strand, within SOA0141at 129.172 kb on - strand, within SOA0141at 129.179 kb on + strand, within SOA0141at 129.187 kb on + strand, within SOA0141at 129.249 kb on + strand, within SOA0141at 129.332 kb on + strand, within SOA0141at 129.340 kb on - strand, within SOA0141at 129.342 kb on + strand, within SOA0141at 129.342 kb on + strand, within SOA0141at 129.342 kb on + strand, within SOA0141at 129.367 kb on + strand, within SOA0141at 129.378 kb on + strand, within SOA0141at 129.379 kb on + strand, within SOA0141at 129.380 kb on + strand, within SOA0141at 129.407 kb on - strand, within SOA0141at 129.417 kb on - strand, within SOA0141at 129.417 kb on - strand, within SOA0141at 129.417 kb on - strand, within SOA0141at 129.417 kb on - strand, within SOA0141at 129.506 kb on + strand, within SOA0141at 129.525 kb on - strand, within SOA0141at 129.576 kb on - strand, within SOA0141at 129.578 kb on + strand, within SOA0141at 129.597 kb on + strand, within SOA0141at 129.605 kb on - strand, within SOA0141at 129.605 kb on - strand, within SOA0141at 129.742 kb on + strand, within SOA0141at 129.751 kb on + strand, within SOA0141at 129.752 kb on + strand, within SOA0141at 129.755 kb on - strand, within SOA0141at 129.778 kb on + strand, within SOA0141at 129.789 kb on + strand, within SOA0141at 129.841 kb on + strand, within SOA0141at 129.849 kb on - strand, within SOA0141at 129.908 kb on + strand, within SOA0141at 129.933 kb on - strand, within SOA0141at 130.017 kb on + strand, within SOA0141at 130.025 kb on - strand, within SOA0141at 130.040 kb on - strand, within SOA0141at 130.071 kb on + strand, within SOA0141at 130.078 kb on - strand, within SOA0141at 130.085 kb on + strand, within SOA0141at 130.095 kb on + strand, within SOA0141at 130.108 kb on + strand, within SOA0141at 130.113 kb on + strand, within SOA0141at 130.119 kb on + strand, within SOA0141at 130.119 kb on + strand, within SOA0141at 130.147 kb on - strand, within SOA0141at 130.161 kb on + strand, within SOA0141at 130.173 kb on + strand, within SOA0141at 130.181 kb on - strand, within SOA0141at 130.210 kb on + strand, within SOA0141at 130.220 kb on + strand, within SOA0141at 130.228 kb on - strand, within SOA0141at 130.228 kb on - strand, within SOA0141at 130.228 kb on - strand, within SOA0141at 130.238 kb on - strand, within SOA0141at 130.239 kb on + strand, within SOA0141at 130.247 kb on - strand, within SOA0141at 130.277 kb on + strand, within SOA0141at 130.356 kb on + strandat 130.357 kb on + strandat 130.357 kb on + strandat 130.357 kb on + strandat 130.365 kb on - strandat 130.365 kb on - strandat 130.365 kb on - strandat 130.365 kb on - strandat 130.473 kb on + strandat 130.481 kb on - strandat 130.489 kb on + strandat 130.508 kb on + strandat 130.509 kb on - strandat 130.533 kb on + strandat 130.546 kb on + strandat 130.554 kb on - strandat 130.554 kb on - strandat 130.627 kb on + strandat 130.635 kb on - strandat 130.640 kb on - strandat 130.663 kb on + strandat 130.676 kb on - strandat 130.725 kb on + strandat 130.733 kb on - strandat 130.778 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Threonine (N)
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127,766 - SOA0140 0.58 -0.1
127,780 + SOA0140 0.59 -0.3
127,788 - SOA0140 0.59 -0.2
127,788 - SOA0140 0.59 -0.4
127,788 - SOA0140 0.59 +0.7
127,791 - SOA0140 0.59 +2.0
127,791 - SOA0140 0.59 +0.1
127,798 + SOA0140 0.59 -0.3
127,876 + SOA0140 0.63 +0.2
127,876 + SOA0140 0.63 -0.0
127,876 + SOA0140 0.63 +0.2
127,876 + SOA0140 0.63 -0.4
127,876 + SOA0140 0.63 -2.3
127,879 - SOA0140 0.63 -1.6
127,882 + SOA0140 0.63 +0.5
127,884 - SOA0140 0.63 +1.2
127,884 - SOA0140 0.63 +1.0
127,884 - SOA0140 0.63 +0.0
127,884 - SOA0140 0.63 +1.3
127,890 - SOA0140 0.63 -0.7
127,892 - SOA0140 0.63 +0.7
127,892 - SOA0140 0.63 -0.2
127,892 - SOA0140 0.63 -0.3
127,907 - SOA0140 0.64 -1.3
127,907 - SOA0140 0.64 -0.3
127,907 - SOA0140 0.64 -0.3
127,912 - SOA0140 0.64 +0.6
127,974 + SOA0140 0.67 +0.5
128,000 + SOA0140 0.68 +0.3
128,053 + SOA0140 0.70 -1.0
128,058 + SOA0140 0.70 +0.4
128,058 + SOA0140 0.70 -0.0
128,058 + SOA0140 0.70 -1.0
128,066 - SOA0140 0.71 +0.2
128,066 - SOA0140 0.71 +0.6
128,066 - SOA0140 0.71 -0.9
128,106 - SOA0140 0.73 +0.5
128,106 - SOA0140 0.73 +1.4
128,197 - SOA0140 0.76 +0.6
128,311 + SOA0140 0.81 +0.4
128,334 - SOA0140 0.82 +0.4
128,453 + SOA0140 0.87 +0.6
128,453 - SOA0140 0.87 -1.6
128,459 - SOA0140 0.88 +0.6
128,461 - SOA0140 0.88 -2.2
128,496 + SOA0140 0.89 +1.5
128,496 + SOA0140 0.89 -0.5
128,504 - SOA0140 0.90 -1.3
128,504 - SOA0140 0.90 -0.7
128,504 - SOA0140 0.90 -0.6
128,504 - SOA0140 0.90 +1.1
128,504 - SOA0140 0.90 -0.8
128,506 + SOA0140 0.90 +0.2
128,506 + SOA0140 0.90 +1.6
128,511 + SOA0140 0.90 +0.5
128,514 - +0.6
128,514 - +1.3
128,571 + -0.5
128,578 - +0.8
128,591 - -0.1
128,594 + -0.8
128,617 + -0.2
128,664 - +0.0
128,674 + +1.4
128,674 + -0.9
128,674 + +1.3
128,682 - +0.2
128,682 - +1.0
128,682 - +0.8
128,727 + +1.4
128,734 + +0.8
128,735 - -0.0
128,735 - +0.8
128,740 + +0.1
128,740 + +0.3
128,770 - -0.5
128,842 - +0.3
128,942 + SOA0141 0.11 +0.1
128,942 + SOA0141 0.11 +0.2
128,942 + SOA0141 0.11 -0.7
128,942 + SOA0141 0.11 -0.7
128,947 + SOA0141 0.11 -1.5
128,947 + SOA0141 0.11 -0.7
128,947 + SOA0141 0.11 -0.2
128,947 + SOA0141 0.11 -0.4
128,947 + SOA0141 0.11 -0.7
128,947 + SOA0141 0.11 +0.1
128,950 + SOA0141 0.11 +0.5
128,950 - SOA0141 0.11 -0.7
128,950 - SOA0141 0.11 +0.5
128,952 + SOA0141 0.11 -0.6
128,952 + SOA0141 0.11 -1.3
128,952 + SOA0141 0.11 -0.4
128,952 + SOA0141 0.11 +0.4
128,952 + SOA0141 0.11 +0.1
128,952 + SOA0141 0.11 +1.3
128,952 + SOA0141 0.11 +1.8
128,952 + SOA0141 0.11 -0.5
128,952 + SOA0141 0.11 -0.2
128,952 + SOA0141 0.11 -0.5
128,952 + SOA0141 0.11 +0.1
128,952 + SOA0141 0.11 +0.1
128,952 + SOA0141 0.11 +0.1
128,952 + SOA0141 0.11 -0.7
128,952 + SOA0141 0.11 -0.3
128,952 + SOA0141 0.11 +1.2
128,952 + SOA0141 0.11 +0.2
128,952 + SOA0141 0.11 -2.0
128,952 + SOA0141 0.11 -0.2
128,952 + SOA0141 0.11 -0.2
128,952 + SOA0141 0.11 +0.1
128,952 + SOA0141 0.11 -0.2
128,952 + SOA0141 0.11 -1.1
128,952 + SOA0141 0.11 +0.2
128,952 + SOA0141 0.11 +1.4
128,952 + SOA0141 0.11 -1.3
128,952 + SOA0141 0.11 -2.4
128,952 + SOA0141 0.11 -1.4
128,952 + SOA0141 0.11 -0.2
128,952 + SOA0141 0.11 +1.1
128,952 + SOA0141 0.11 -0.5
128,952 + SOA0141 0.11 -0.2
128,955 - SOA0141 0.12 -3.2
128,955 - SOA0141 0.12 -1.3
128,955 - SOA0141 0.12 -1.3
128,955 - SOA0141 0.12 -1.3
128,957 + SOA0141 0.12 -0.6
128,960 - SOA0141 0.12 -0.2
128,960 - SOA0141 0.12 -0.7
128,960 - SOA0141 0.12 -0.5
128,960 - SOA0141 0.12 +0.4
128,960 - SOA0141 0.12 -1.4
128,960 - SOA0141 0.12 -0.6
128,960 - SOA0141 0.12 +0.2
128,960 - SOA0141 0.12 -0.7
128,960 - SOA0141 0.12 -1.2
128,960 - SOA0141 0.12 -2.2
128,960 - SOA0141 0.12 -1.0
128,960 - SOA0141 0.12 -0.4
128,960 - SOA0141 0.12 +0.4
128,960 - SOA0141 0.12 +0.4
128,960 - SOA0141 0.12 -0.6
128,960 - SOA0141 0.12 +0.7
128,960 - SOA0141 0.12 +0.1
128,960 - SOA0141 0.12 +0.5
128,960 - SOA0141 0.12 -0.9
128,960 - SOA0141 0.12 +0.8
128,960 - SOA0141 0.12 +0.6
128,960 - SOA0141 0.12 +0.8
128,960 - SOA0141 0.12 +0.8
128,960 - SOA0141 0.12 +1.0
128,960 - SOA0141 0.12 +0.1
128,960 - SOA0141 0.12 +0.4
128,960 - SOA0141 0.12 -0.9
128,960 - SOA0141 0.12 +0.6
128,960 - +2.9
128,960 - SOA0141 0.12 +0.1
128,960 - SOA0141 0.12 -0.3
128,960 - SOA0141 0.12 +1.7
128,960 - SOA0141 0.12 -1.7
128,960 - SOA0141 0.12 -0.2
128,960 - SOA0141 0.12 -0.1
128,960 - SOA0141 0.12 +0.6
128,960 - SOA0141 0.12 +1.2
128,965 - SOA0141 0.12 +0.8
128,985 + SOA0141 0.13 -1.4
128,985 + SOA0141 0.13 -0.1
128,993 - SOA0141 0.14 +0.4
129,042 + SOA0141 0.17 +1.6
129,042 + SOA0141 0.17 -0.1
129,050 - SOA0141 0.17 +0.1
129,118 + SOA0141 0.21 +0.1
129,126 - SOA0141 0.21 +0.7
129,133 + SOA0141 0.22 +0.4
129,160 - SOA0141 0.23 -0.8
129,165 - SOA0141 0.24 +0.7
129,172 - SOA0141 0.24 -1.2
129,179 + SOA0141 0.24 +1.1
129,187 + SOA0141 0.25 +0.4
129,249 + SOA0141 0.29 +0.2
129,332 + SOA0141 0.33 +0.1
129,340 - SOA0141 0.34 -0.1
129,342 + SOA0141 0.34 -0.5
129,342 + SOA0141 0.34 +1.1
129,342 + SOA0141 0.34 -0.1
129,367 + SOA0141 0.35 -0.7
129,378 + SOA0141 0.36 -0.3
129,379 + SOA0141 0.36 -1.6
129,380 + SOA0141 0.36 -0.5
129,407 - SOA0141 0.38 +1.4
129,417 - SOA0141 0.38 +0.8
129,417 - SOA0141 0.38 -0.9
129,417 - SOA0141 0.38 -0.1
129,417 - SOA0141 0.38 -0.2
129,506 + SOA0141 0.43 +0.1
129,525 - SOA0141 0.44 -1.0
129,576 - SOA0141 0.47 -1.2
129,578 + SOA0141 0.48 -1.0
129,597 + SOA0141 0.49 -0.1
129,605 - SOA0141 0.49 -0.5
129,605 - SOA0141 0.49 -0.3
129,742 + SOA0141 0.57 +0.8
129,751 + SOA0141 0.58 +0.8
129,752 + SOA0141 0.58 -1.5
129,755 - SOA0141 0.58 +0.3
129,778 + SOA0141 0.59 +1.1
129,789 + SOA0141 0.60 -0.3
129,841 + SOA0141 0.63 -0.9
129,849 - SOA0141 0.63 -0.9
129,908 + SOA0141 0.67 +0.6
129,933 - SOA0141 0.68 +0.1
130,017 + SOA0141 0.73 -1.4
130,025 - SOA0141 0.73 +1.4
130,040 - SOA0141 0.74 +1.1
130,071 + SOA0141 0.76 -1.1
130,078 - SOA0141 0.76 +1.2
130,085 + SOA0141 0.77 -0.1
130,095 + SOA0141 0.77 +0.9
130,108 + SOA0141 0.78 -1.9
130,113 + SOA0141 0.78 -1.0
130,119 + SOA0141 0.79 +0.1
130,119 + SOA0141 0.79 +0.7
130,147 - SOA0141 0.80 -2.0
130,161 + SOA0141 0.81 -1.1
130,173 + SOA0141 0.82 -0.5
130,181 - SOA0141 0.82 -0.6
130,210 + SOA0141 0.84 -0.6
130,220 + SOA0141 0.85 +1.8
130,228 - SOA0141 0.85 -0.1
130,228 - SOA0141 0.85 +0.2
130,228 - SOA0141 0.85 -0.7
130,238 - SOA0141 0.86 +0.2
130,239 + SOA0141 0.86 +1.4
130,247 - SOA0141 0.86 +2.5
130,277 + SOA0141 0.88 -0.8
130,356 + +1.0
130,357 + +0.1
130,357 + +0.8
130,357 + +0.6
130,365 - +0.6
130,365 - +0.4
130,365 - +1.2
130,365 - +0.8
130,473 + -0.3
130,481 - -0.2
130,489 + -0.8
130,508 + +1.8
130,509 - -0.8
130,533 + -0.2
130,546 + +0.4
130,554 - -0.3
130,554 - -0.9
130,627 + -1.5
130,635 - -1.0
130,640 - +1.0
130,663 + -0.7
130,676 - -0.0
130,725 + +2.0
130,733 - +2.3
130,778 - -0.3

Or see this region's nucleotide sequence