Strain Fitness in Shewanella oneidensis MR-1 around SO2118

Experiment: L-Threonine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Threonine (N)
2,222,116	+		SO2117	0.20	+0.1
2,222,124	-		SO2117	0.21	-1.0
2,222,124	-		SO2117	0.21	-0.3
2,222,170	-		SO2117	0.25	-2.4
2,222,170	-		SO2117	0.25	-0.5
2,222,199	+		SO2117	0.27	+0.4
2,222,199	+		SO2117	0.27	-0.2
2,222,199	+		SO2117	0.27	+0.2
2,222,199	+		SO2117	0.27	-2.8
2,222,199	+		SO2117	0.27	+0.1
2,222,199	+		SO2117	0.27	-1.0
2,222,207	-		SO2117	0.28	+0.3
2,222,207	-		SO2117	0.28	+1.2
2,222,207	-		SO2117	0.28	+1.0
2,222,207	-		SO2117	0.28	+1.0
2,222,207	-		SO2117	0.28	+1.3
2,222,207	-		SO2117	0.28	-0.8
2,222,207	-		SO2117	0.28	+0.7
2,222,207	-		SO2117	0.28	-0.4
2,222,210	+		SO2117	0.28	+0.9
2,222,218	-		SO2117	0.29	+0.1
2,222,218	-		SO2117	0.29	+0.7
2,222,218	-		SO2117	0.29	+0.1
2,222,218	-		SO2117	0.29	-0.0
2,222,218	-		SO2117	0.29	+0.7
2,222,218	-		SO2117	0.29	+0.7
2,222,218	-		SO2117	0.29	+1.1
2,222,246	+		SO2117	0.31	+0.7
2,222,288	+		SO2117	0.35	-0.1
2,222,297	-		SO2117	0.36	+0.5
2,222,303	+		SO2117	0.36	-0.5
2,222,303	+		SO2117	0.36	+0.1
2,222,311	-		SO2117	0.37	-0.3
2,222,311	-		SO2117	0.37	+0.9
2,222,313	+		SO2117	0.37	-1.3
2,222,320	+		SO2117	0.38	+0.2
2,222,320	+		SO2117	0.38	+0.9
2,222,320	+		SO2117	0.38	+0.8
2,222,328	-		SO2117	0.39	-0.2
2,222,328	-		SO2117	0.39	-0.4
2,222,346	+		SO2117	0.40	-0.5
2,222,365	+		SO2117	0.42	-0.5
2,222,365	+		SO2117	0.42	-1.6
2,222,373	-		SO2117	0.43	+0.7
2,222,375	+		SO2117	0.43	+0.8
2,222,390	+		SO2117	0.44	+0.1
2,222,402	+		SO2117	0.45	+0.9
2,222,410	-		SO2117	0.46	+0.1
2,222,483	+		SO2117	0.52	-1.3
2,222,483	+		SO2117	0.52	+0.6
2,222,483	+		SO2117	0.52	+0.7
2,222,483	+		SO2117	0.52	-0.4
2,222,491	-		SO2117	0.53	-0.1
2,222,491	-		SO2117	0.53	+0.2
2,222,556	+		SO2117	0.59	+0.6
2,222,561	+		SO2117	0.59	+0.2
2,222,657	+		SO2117	0.68	-0.1
2,222,657	+		SO2117	0.68	+0.6
2,222,657	+		SO2117	0.68	-1.5
2,222,657	+		SO2117	0.68	-0.1
2,222,658	+		SO2117	0.68	-0.4
2,222,665	-		SO2117	0.68	+0.0
2,222,666	-		SO2117	0.68	-0.2
2,222,767	+		SO2117	0.77	+0.6
2,222,797	+		SO2117	0.80	+1.3
2,222,830	+		SO2117	0.83	+0.8
2,222,830	+		SO2117	0.83	+1.4
2,222,835	+		SO2117	0.83	+0.7
2,222,840	+		SO2117	0.84	-0.5
2,222,840	+		SO2117	0.84	-3.0
2,222,848	-		SO2117	0.84	+1.1
2,222,849	-		SO2117	0.85	+0.5
2,222,888	+		SO2117	0.88	+0.6
2,222,888	+		SO2117	0.88	-0.9
2,222,888	+		SO2117	0.88	+0.4
2,222,897	+		SO2117	0.89	-2.0
2,222,902	+		SO2117	0.89	-0.7
2,222,910	+				+1.2
2,222,912	+				+0.7
2,222,912	-				-0.5
2,222,926	+				+0.1
2,222,930	+				+0.4
2,222,944	+				-0.0
2,222,944	+				-0.5
2,222,946	-				-1.7
2,222,954	+				+0.9
2,222,977	-				-0.0
2,222,977	-				+0.4
2,222,986	+				+0.7
2,222,987	+				+0.2
2,223,009	+				+0.4
2,223,009	+				+0.8
2,223,025	-				+1.1
2,223,025	-				-0.6
2,223,027	+				+0.3
2,223,035	-				-0.2
2,223,095	+		SO2118	0.20	-0.7
2,223,095	+		SO2118	0.20	+0.5
2,223,097	+		SO2118	0.21	+0.1
2,223,103	-		SO2118	0.23	+0.1
2,223,103	-		SO2118	0.23	+0.5
2,223,126	+		SO2118	0.31	-0.1
2,223,134	-		SO2118	0.34	+0.4
2,223,134	-		SO2118	0.34	+2.0
2,223,149	-		SO2118	0.39	+0.1
2,223,157	-		SO2118	0.42	+0.4
2,223,167	+		SO2118	0.45	-0.8
2,223,175	-		SO2118	0.48	+1.4
2,223,175	-		SO2118	0.48	+0.2
2,223,183	-		SO2118	0.51	+0.6
2,223,188	+		SO2118	0.53	-0.0
2,223,188	+		SO2118	0.53	+1.6
2,223,188	+		SO2118	0.53	+1.1
2,223,188	+		SO2118	0.53	+0.8
2,223,188	+		SO2118	0.53	+0.8
2,223,188	+		SO2118	0.53	-0.5
2,223,188	+		SO2118	0.53	+0.2
2,223,188	+		SO2118	0.53	-0.8
2,223,188	+		SO2118	0.53	-1.1
2,223,188	+		SO2118	0.53	+0.1
2,223,188	+		SO2118	0.53	+0.1
2,223,188	+		SO2118	0.53	+0.5
2,223,188	+		SO2118	0.53	+1.8
2,223,188	+		SO2118	0.53	-0.1
2,223,188	+		SO2118	0.53	+0.2
2,223,188	+		SO2118	0.53	-0.4
2,223,188	+		SO2118	0.53	+0.5
2,223,188	+		SO2118	0.53	+1.0
2,223,188	+		SO2118	0.53	-2.0
2,223,188	+		SO2118	0.53	-0.2
2,223,193	+		SO2118	0.54	-2.1
2,223,196	-		SO2118	0.55	+0.3
2,223,196	-		SO2118	0.55	+1.0
2,223,196	-		SO2118	0.55	+0.9
2,223,196	-		SO2118	0.55	-0.5
2,223,196	-		SO2118	0.55	+0.7
2,223,196	-		SO2118	0.55	-0.0
2,223,196	-		SO2118	0.55	+0.6
2,223,196	-		SO2118	0.55	+0.8
2,223,196	-		SO2118	0.55	-2.0
2,223,196	-		SO2118	0.55	+0.5
2,223,196	-		SO2118	0.55	+0.0
2,223,196	-		SO2118	0.55	+0.8
2,223,196	-		SO2118	0.55	+0.6
2,223,196	-		SO2118	0.55	-0.5
2,223,196	-		SO2118	0.55	-0.7
2,223,201	-		SO2118	0.57	+0.4
2,223,203	+		SO2118	0.58	+1.1
2,223,203	-		SO2118	0.58	+0.1
2,223,209	+		SO2118	0.60	+0.3
2,223,211	+		SO2118	0.61	-0.8
2,223,211	-		SO2118	0.61	+0.6
2,223,216	+		SO2118	0.62	+0.7
2,223,219	+		SO2118	0.64	-0.1
2,223,221	+		SO2118	0.64	-1.0
2,223,221	+		SO2118	0.64	-0.4
2,223,221	+		SO2118	0.64	+0.7
2,223,221	+		SO2118	0.64	-0.2
2,223,221	+		SO2118	0.64	+0.6
2,223,222	-		SO2118	0.65	+1.5
2,223,227	-		SO2118	0.66	-1.1
2,223,227	-		SO2118	0.66	-0.3
2,223,229	-		SO2118	0.67	+1.0
2,223,229	-		SO2118	0.67	+0.3
2,223,229	-		SO2118	0.67	+1.2
2,223,247	+		SO2118	0.73	+0.7
2,223,253	+		SO2118	0.75	+0.8
2,223,254	-		SO2118	0.76	+1.0
2,223,254	-		SO2118	0.76	+0.8
2,223,261	-		SO2118	0.78	-1.7
2,223,267	-		SO2118	0.80	-0.8
2,223,280	-		SO2118	0.85	-0.1
2,223,322	-				+0.4
2,223,322	-				+1.1
2,223,326	+				-0.2
2,223,333	-				+1.7
2,223,334	-				-1.2
2,223,361	+				+0.1
2,223,396	+				+0.9
2,223,433	-				+0.3
2,223,457	-				-0.7
2,223,472	+				+0.0
2,223,472	+				+0.8
2,223,480	-				+0.7
2,223,517	+		SO2119	0.11	-2.1
2,223,517	-		SO2119	0.11	+0.5
2,223,518	-		SO2119	0.11	+0.2
2,223,528	+		SO2119	0.12	+1.1
2,223,529	+		SO2119	0.12	+0.1
2,223,529	+		SO2119	0.12	+1.0
2,223,529	+		SO2119	0.12	-1.8
2,223,529	+		SO2119	0.12	+1.0
2,223,529	+		SO2119	0.12	+0.8
2,223,529	+		SO2119	0.12	+0.0
2,223,529	+		SO2119	0.12	-0.3
2,223,529	+		SO2119	0.12	-0.7
2,223,529	+		SO2119	0.12	+0.3
2,223,529	+		SO2119	0.12	-0.8
2,223,529	+		SO2119	0.12	+1.1
2,223,529	+		SO2119	0.12	-0.0
2,223,529	+		SO2119	0.12	+0.7
2,223,529	+		SO2119	0.12	+1.0
2,223,529	+		SO2119	0.12	+0.8
2,223,529	+		SO2119	0.12	+0.2
2,223,529	+		SO2119	0.12	-0.1
2,223,529	+		SO2119	0.12	-0.2
2,223,529	+		SO2119	0.12	+0.8
2,223,529	+		SO2119	0.12	+0.9
2,223,529	+		SO2119	0.12	-0.2
2,223,529	+		SO2119	0.12	-1.8
2,223,529	+		SO2119	0.12	-0.4
2,223,529	+		SO2119	0.12	+2.4
2,223,529	+		SO2119	0.12	-0.0
2,223,529	+		SO2119	0.12	+2.3
2,223,529	+		SO2119	0.12	+0.4
2,223,529	+		SO2119	0.12	+1.4
2,223,529	+		SO2119	0.12	+0.1
2,223,529	+		SO2119	0.12	+0.6
2,223,529	+		SO2119	0.12	-0.4
2,223,529	+		SO2119	0.12	-0.9
2,223,529	+		SO2119	0.12	-1.3
2,223,529	+		SO2119	0.12	+0.6
2,223,529	+		SO2119	0.12	+0.9
2,223,529	+		SO2119	0.12	+1.0
2,223,529	+		SO2119	0.12	+0.2
2,223,529	+		SO2119	0.12	+1.1
2,223,529	+		SO2119	0.12	+0.6
2,223,530	+		SO2119	0.12	+2.2
2,223,537	-		SO2119	0.12	+0.5
2,223,537	-		SO2119	0.12	-0.1
2,223,537	-		SO2119	0.12	+1.1
2,223,537	-		SO2119	0.12	+1.5
2,223,537	-		SO2119	0.12	+1.0
2,223,537	-		SO2119	0.12	-0.3
2,223,537	-		SO2119	0.12	+0.9
2,223,537	-		SO2119	0.12	+1.2
2,223,537	-		SO2119	0.12	-0.1
2,223,537	-		SO2119	0.12	-0.1
2,223,537	-		SO2119	0.12	+1.6
2,223,537	-		SO2119	0.12	-0.3
2,223,537	-		SO2119	0.12	+1.0
2,223,537	-		SO2119	0.12	+1.3
2,223,537	-		SO2119	0.12	+2.0
2,223,537	-		SO2119	0.12	-0.7
2,223,537	-		SO2119	0.12	+0.8
2,223,537	-		SO2119	0.12	+2.6
2,223,537	-		SO2119	0.12	+0.7
2,223,537	-		SO2119	0.12	+0.3
2,223,537	-		SO2119	0.12	+0.6
2,223,537	-		SO2119	0.12	+0.1
2,223,537	-		SO2119	0.12	-0.9
2,223,537	-		SO2119	0.12	+1.0
2,223,537	-		SO2119	0.12	+0.4
2,223,537	-		SO2119	0.12	+0.8
2,223,537	-		SO2119	0.12	+1.9
2,223,537	-		SO2119	0.12	+1.0
2,223,537	-		SO2119	0.12	-0.6
2,223,537	-		SO2119	0.12	+2.3
2,223,537	-		SO2119	0.12	-0.4
2,223,537	-		SO2119	0.12	+1.3
2,223,537	-		SO2119	0.12	+0.5
2,223,538	-		SO2119	0.12	-1.9
2,223,538	-		SO2119	0.12	+1.3
2,223,543	+		SO2119	0.12	-0.3
2,223,549	+		SO2119	0.13	+1.3
2,223,556	+		SO2119	0.13	+1.0
2,223,557	-		SO2119	0.13	+1.4
2,223,591	-		SO2119	0.15	+0.0
2,223,596	+		SO2119	0.16	+1.5
2,223,609	+		SO2119	0.16	+1.2
2,223,623	+		SO2119	0.17	+1.1
2,223,660	+		SO2119	0.19	+1.8
2,223,673	-		SO2119	0.20	-0.3
2,223,675	-		SO2119	0.20	+0.9
2,223,689	-		SO2119	0.21	-0.5
2,223,707	+		SO2119	0.22	+0.5
2,223,707	+		SO2119	0.22	-0.1
2,223,707	+		SO2119	0.22	-0.3
2,223,707	+		SO2119	0.22	+0.4
2,223,707	+		SO2119	0.22	+0.4
2,223,707	+		SO2119	0.22	+0.7
2,223,707	+		SO2119	0.22	+0.7
2,223,707	+		SO2119	0.22	+0.9
2,223,707	+		SO2119	0.22	+1.1
2,223,707	+		SO2119	0.22	+1.1
2,223,707	+		SO2119	0.22	+0.3
2,223,707	+		SO2119	0.22	-1.1
2,223,707	+		SO2119	0.22	+1.1
2,223,707	+		SO2119	0.22	+0.9
2,223,708	+		SO2119	0.22	+0.2
2,223,708	+		SO2119	0.22	+0.6
2,223,715	-		SO2119	0.23	-0.1
2,223,715	-		SO2119	0.23	+0.0
2,223,715	-		SO2119	0.23	-0.3
2,223,715	-		SO2119	0.23	+0.5
2,223,715	-		SO2119	0.23	+1.3
2,223,715	-		SO2119	0.23	-0.6
2,223,715	-		SO2119	0.23	+1.6
2,223,715	-		SO2119	0.23	+1.3
2,223,715	-		SO2119	0.23	+0.9
2,223,715	-		SO2119	0.23	-0.8
2,223,715	-		SO2119	0.23	+1.0
2,223,715	-		SO2119	0.23	+1.1
2,223,716	-		SO2119	0.23	+0.2
2,223,716	-		SO2119	0.23	-0.7
2,223,720	+		SO2119	0.23	+0.2
2,223,720	+		SO2119	0.23	+0.9
2,223,720	+		SO2119	0.23	-0.1
2,223,740	+		SO2119	0.24	+0.7
2,223,771	+		SO2119	0.26	+0.9
2,223,795	+		SO2119	0.27	+0.1
2,223,813	+		SO2119	0.28	+0.1
2,223,856	+		SO2119	0.31	+0.7
2,223,856	+		SO2119	0.31	+0.4
2,223,856	+		SO2119	0.31	-1.1
2,223,856	+		SO2119	0.31	+1.1
2,223,856	+		SO2119	0.31	-0.1
2,223,861	+		SO2119	0.31	+0.4
2,223,864	-		SO2119	0.31	+0.4
2,223,866	+		SO2119	0.32	-0.4
2,223,866	+		SO2119	0.32	+0.5
2,223,866	+		SO2119	0.32	+1.0
2,223,866	+		SO2119	0.32	-1.1
2,223,866	+		SO2119	0.32	-0.0
2,223,866	+		SO2119	0.32	+0.4
2,223,866	+		SO2119	0.32	+0.3
2,223,866	+		SO2119	0.32	+1.0
2,223,866	+		SO2119	0.32	+1.0
2,223,866	+		SO2119	0.32	-0.4
2,223,866	+		SO2119	0.32	-0.1
2,223,866	+		SO2119	0.32	+1.5
2,223,866	+		SO2119	0.32	+0.3
2,223,866	+		SO2119	0.32	-0.6
2,223,866	+		SO2119	0.32	+0.1
2,223,866	+		SO2119	0.32	+1.2
2,223,874	-		SO2119	0.32	+0.7
2,223,874	-		SO2119	0.32	+0.6
2,223,874	-		SO2119	0.32	-0.2
2,223,874	-		SO2119	0.32	+0.4
2,223,874	-		SO2119	0.32	+1.3
2,223,874	-		SO2119	0.32	+0.9
2,223,907	-		SO2119	0.34	+0.1
2,223,911	+		SO2119	0.34	+0.5
2,223,912	-		SO2119	0.34	+0.5
2,223,919	+		SO2119	0.35	-0.7
2,223,919	-		SO2119	0.35	+0.5
2,223,937	+		SO2119	0.36	+0.7
2,223,944	-		SO2119	0.36	+2.6
2,223,946	+		SO2119	0.36	-0.3
2,223,946	+		SO2119	0.36	+0.1
2,223,946	+		SO2119	0.36	-0.1
2,223,946	+		SO2119	0.36	-1.9
2,223,946	+		SO2119	0.36	+0.8
2,223,946	+		SO2119	0.36	+0.7
2,223,946	+		SO2119	0.36	-1.5
2,223,946	+		SO2119	0.36	-1.1
2,223,947	+		SO2119	0.36	+0.5
2,223,947	+		SO2119	0.36	-0.2
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2,223,955	-		SO2119	0.37	+1.1
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