Experiment: L-Threonine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0585 and SO0586 are separated by 89 nucleotides SO0586 and SO0587 are separated by 27 nucleotides SO0587 and SO0588 are separated by 15 nucleotides
SO0585: SO0585 - D-isomer specific 2-hydroxyacid dehydrogenase family protein (NCBI ptt file), at 610,994 to 611,929
SO0585
SO0586: SO0586 - conserved hypothetical protein (NCBI ptt file), at 612,019 to 612,354
SO0586
SO0587: SO0587 - glycerophosphoryl diester phosphodiesterase, putative (NCBI ptt file), at 612,382 to 613,104
SO0587
SO0588: SO0588 - transporter, putative (NCBI ptt file), at 613,120 to 616,323
SO0588
Position (kb) 612
613
614 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 611.412 kb on - strand, within SO0585 at 611.430 kb on + strand, within SO0585 at 611.434 kb on + strand, within SO0585 at 611.560 kb on - strand, within SO0585 at 611.698 kb on + strand, within SO0585 at 611.765 kb on + strand, within SO0585 at 611.773 kb on - strand, within SO0585 at 611.793 kb on - strand, within SO0585 at 611.853 kb on - strand at 612.002 kb on + strand at 612.010 kb on - strand at 612.010 kb on - strand at 612.069 kb on + strand, within SO0586 at 612.069 kb on + strand, within SO0586 at 612.077 kb on - strand, within SO0586 at 612.084 kb on - strand, within SO0586 at 612.237 kb on + strand, within SO0586 at 612.348 kb on + strand at 612.349 kb on + strand at 612.349 kb on + strand at 612.349 kb on + strand at 612.349 kb on + strand at 612.349 kb on + strand at 612.349 kb on + strand at 612.349 kb on + strand at 612.354 kb on + strand at 612.354 kb on + strand at 612.354 kb on + strand at 612.357 kb on - strand at 612.357 kb on - strand at 612.361 kb on + strand at 612.362 kb on - strand at 612.362 kb on - strand at 612.454 kb on - strand at 612.478 kb on - strand, within SO0587 at 612.480 kb on + strand, within SO0587 at 612.480 kb on + strand, within SO0587 at 612.480 kb on + strand, within SO0587 at 612.480 kb on + strand, within SO0587 at 612.488 kb on - strand, within SO0587 at 612.505 kb on + strand, within SO0587 at 612.528 kb on + strand, within SO0587 at 612.529 kb on - strand, within SO0587 at 612.564 kb on - strand, within SO0587 at 612.773 kb on + strand, within SO0587 at 612.843 kb on + strand, within SO0587 at 612.850 kb on - strand, within SO0587 at 612.953 kb on + strand, within SO0587 at 612.995 kb on + strand, within SO0587 at 613.194 kb on + strand at 613.351 kb on - strand at 613.351 kb on - strand at 613.397 kb on + strand at 613.454 kb on + strand, within SO0588 at 613.454 kb on + strand, within SO0588 at 613.454 kb on + strand, within SO0588 at 613.455 kb on + strand, within SO0588 at 613.652 kb on - strand, within SO0588 at 613.887 kb on + strand, within SO0588 at 613.928 kb on + strand, within SO0588 at 613.941 kb on + strand, within SO0588 at 613.968 kb on - strand, within SO0588 at 613.985 kb on - strand, within SO0588 at 614.058 kb on + strand, within SO0588 at 614.066 kb on - strand, within SO0588
Per-strain Table
Position Strand Gene LocusTag Fraction L-Threonine (N) remove 611,412 - SO0585 0.45 +1.8 611,430 + SO0585 0.47 -2.4 611,434 + SO0585 0.47 -0.7 611,560 - SO0585 0.60 +0.4 611,698 + SO0585 0.75 +0.6 611,765 + SO0585 0.82 +0.6 611,773 - SO0585 0.83 -0.0 611,793 - SO0585 0.85 +0.3 611,853 - +1.2 612,002 + -0.8 612,010 - +0.4 612,010 - -0.4 612,069 + SO0586 0.15 -0.5 612,069 + SO0586 0.15 -0.3 612,077 - SO0586 0.17 +0.4 612,084 - SO0586 0.19 +0.4 612,237 + SO0586 0.65 +0.2 612,348 + +0.5 612,349 + -0.2 612,349 + +1.5 612,349 + +0.2 612,349 + +1.0 612,349 + -0.7 612,349 + -2.1 612,349 + +0.5 612,354 + -0.6 612,354 + +0.2 612,354 + -0.2 612,357 - -1.4 612,357 - -2.7 612,361 + +0.3 612,362 - -0.7 612,362 - +0.6 612,454 - +1.5 612,478 - SO0587 0.13 -0.9 612,480 + SO0587 0.14 -0.2 612,480 + SO0587 0.14 +0.0 612,480 + SO0587 0.14 -0.5 612,480 + SO0587 0.14 +0.8 612,488 - SO0587 0.15 +1.0 612,505 + SO0587 0.17 -0.8 612,528 + SO0587 0.20 -0.9 612,529 - SO0587 0.20 +0.0 612,564 - SO0587 0.25 -0.2 612,773 + SO0587 0.54 +0.3 612,843 + SO0587 0.64 -1.0 612,850 - SO0587 0.65 -1.2 612,953 + SO0587 0.79 -0.8 612,995 + SO0587 0.85 +1.5 613,194 + +0.8 613,351 - +2.0 613,351 - +0.2 613,397 + +0.5 613,454 + SO0588 0.10 +0.2 613,454 + SO0588 0.10 -1.4 613,454 + SO0588 0.10 -0.9 613,455 + SO0588 0.10 +1.0 613,652 - SO0588 0.17 -3.2 613,887 + SO0588 0.24 +0.8 613,928 + SO0588 0.25 +0.2 613,941 + SO0588 0.26 -0.4 613,968 - SO0588 0.26 -0.3 613,985 - SO0588 0.27 -0.1 614,058 + SO0588 0.29 -0.4 614,066 - SO0588 0.30 -0.1
Or see this region's nucleotide sequence